Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00635 ATATTTATTAGACTCATAGTTTCATATATTATATTATTTACTAACTTTGATTTCTCTAGTTTTATAGCAAGCATGTCTTCGTTCTCAAATGAGGATCAAAGTAATGATAATCAGTCACAGGAAAATAATCTAAGGAAAGGGCCATGGACAGCAGAAGAAGATGCAATACTGGCAGAATATGTGACAAAACATGGACCAGGAAATTGGAACATAGTGCAGCAAAACACTGGACTACTTCGTTGCGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATCTAAGGAGAGGTGCATTCACCAAAGAAGAACAAAGGAAAGTCATTGAGTTACATGCGGAGATGGGAAATAAATGGGCTAAAATGGCACAGAAGTTGCCTGGACGAACAGACAATGAAATCAAGAACTTTTGGAACACTAGACTGAAGAAAAGGAAACGAATTGGCTTAGACCTCTACCCAGATGGCATAAAACCTGTGTCTGATTCCCACAACCCAAACACTATTCTAGCTACTTACACTCATGGTAACGAAGTAGTAGGGACATCATCTCAACATGCCATGTTAAATAATTTCAGTAACACTCAAAATCAACCACTCCCTGTACAACCAGTTTCTATGGTACGTGAAAACATGAAACCACCTCAAGAAATGCAACCGTCTGAGGTACCTCAGCTACTACAACTACCTGAAGCAGGTAGATCATCTTATGTACCACATGTGGTGTTCAACACTCCAAATAAACGACTGCGTGTACAACCAAATTCTATGGTACGTGGAAACATGAAACCGTCTGGCGTACCTCAAGGAATAATGCAACTGTCTGAGGTGCCTGAAGAACTACAACGACAAGGTACATCATCTTATGTACCACATGTGGTGTTCAACAATTCCAGTAACACTCCAAATCAACCACTGTCTGTACAAGCAATTTCTATGGTACGTGAAAACATGGAACCGTCTGGCATACCTCAAGAAATAATGCAACTGCCTGATGTACTTGAGGAACTACAACTACCTGAAGCAGATTTTGATGCGTTACTGGGAGATTTCGCGTATGATGACTATGCATGTTTAGATGGCCCTTTTTCGACATCAGAGTTGCCTCCATTGCCATCATGTCATGACATAACATTTGAAGAGTCAATGATAGTGAGAGAGAATTCTCAGGCAGAGACTAACCAGTATTATGAACCACGTTCTCCACGTAGCAATGGGTATTTGGAGTCTATGTTTTATCCACCAAAGGTTTCGCAAGAACAAGATGATTTTTCCATGCAAGGGAAGTTGAATATGAGAAATGCCACAGAAATTTCCTACCAGAGAAAACCTGAAAATGAAGATGTTTTGGGTGACTTGATCTGGCCAGAGAATCAACATGATGATGCTTTAAATGACTATGTCCGTTCTTTTTTGAAACCTTAA 1431 0.399 IFIRLIVSYIILFTNFDFSSFIASMSSFSNEDQSNDNQSQENNLRKGPWTAEEDAILAEYVTKHGPGNWNIVQQNTGLLRCGKSCRLRWTNHLRPDLRRGAFTKEEQRKVIELHAEMGNKWAKMAQKLPGRTDNEIKNFWNTRLKKRKRIGLDLYPDGIKPVSDSHNPNTILATYTHGNEVVGTSSQHAMLNNFSNTQNQPLPVQPVSMVRENMKPPQEMQPSEVPQLLQLPEAGRSSYVPHVVFNTPNKRLRVQPNSMVRGNMKPSGVPQGIMQLSEVPEELQRQGTSSYVPHVVFNNSSNTPNQPLSVQAISMVRENMEPSGIPQEIMQLPDVLEELQLPEADFDALLGDFAYDDYACLDGPFSTSELPPLPSCHDITFEESMIVRENSQAETNQYYEPRSPRSNGYLESMFYPPKVSQEQDDFSMQGKLNMRNATEISYQRKPENEDVLGDLIWPENQHDDALNDYVRSFLKP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00635 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 93 IPR017930 -
Vimu1g00635 476 CDD SANT 48 93 IPR001005 -
Vimu1g00635 476 Gene3D - 101 147 - -
Vimu1g00635 476 Pfam Myb-like DNA-binding domain 99 142 IPR001005 -
Vimu1g00635 476 Pfam Myb-like DNA-binding domain 46 93 IPR001005 -
Vimu1g00635 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Vimu1g00635 476 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Vimu1g00635 476 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 29 439 - -
Vimu1g00635 476 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
Vimu1g00635 476 FunFam MYB-related transcription factor 45 98 - -
Vimu1g00635 476 SMART sant 98 146 IPR001005 -
Vimu1g00635 476 SMART sant 45 95 IPR001005 -
Vimu1g00635 476 Gene3D - 46 98 - -
Vimu1g00635 476 CDD SANT 101 144 IPR001005 -
Vimu1g00635 476 SUPERFAMILY Homeodomain-like 43 140 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00635 Vimu-Chr1 4056587 4058216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00635 25 190 MYB Transcription Factor Family AT2G26960 54.819 5.51e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g00635 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00635 K09422 - vra:106763259 459.914