Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00623 ATGGGAACAAACGAGACTCTGGTAAGCATAAGCAATACAATTTTCAGACGAGTAGTGTTCGACGAGCAGAATTCAGACCGAGATGGGAGATTTATCATCTACAATGTTCAGATTGATATCCCACCAAAGATTGTATCTGATGGCATCTGGGGTAACACTGATATTGGCGCATTACCTGATAAAACTGTAGTGCCTCTGTTGGAATTCCAAATTCTCACCATTTTCGTCGTCACACAATGTTTTCATCTGGTACTCAAGCGTCTGGGGTTCCCCTATTTCGTTTCTCAAATGATGGTATTTATATACAAACAAATGTCTTCTCCCTTGTCCTATCTTTGTTTCTGGAATCATTGCATACTATATAGTAGCAGTCATTATCATATTGTTGTAGTTTGTTTTGCAATTTATGTGTGTGATTTTCAATTGCAGACTGGGTTTGTTTTAGGTCCTTCTCTCAAGATAGAGTCGTTGAAAGAACGAAAAAGCCTGTTGTTCCCATACGGTACTGAAGACTTGTTGAACCTGGTATCATCATTAGGGTACACATTCTTCATGTTTCAAAATTCGGTGCAAATGGATTTCAGCATGATAACGAGAACTGGGAAGAAAGCTTGGGCAATCGCTCTTTCCTCCCTGATGATTCCAACGGTTGTTGGTCTGTCCCTGTGCTATTACTTCATGGAGCACGTGCAGAAAACCATAGGAGAGTTTGATGGAGATAATCTCCCCGTGATAGTAATAGGGCACAGTGGTTGCTCCTTCACAGTGATAGCTTCTCTTCTATCTGATCTGAAGATTTTGAACTCTGAACTTGGACGCTTAGCACTTTCAGCAGCTCTTGTAATGGATGTGATAAACTCAGTTGTGACAGGATTAGGCACTTCTATAATAAGTCATCTTAAAACGAATCCTCACGATGGTAGCAAAGGACCTGAACTTGTGATGTACGCTGTAACCAAATACGTTCTTTTCGTGACAACTGTGATTATGATCGGACGCCCCGCAATGAAGTGGATAGTTAGGAACACACCCGAAGGAAGACCTGTGAAGAAAGCATACACCTTTGTGGTTGTCCTCATGACCTTGTTGGCTGGGTTGTTTGGAATGTTCGCTCACCAGACTGTGTTAGGTGGGGTTGTCCTCTTTGGCCTTCTTGTGCCAGAAGGTCCTCCACTAGGCTCTGAACTTATCAAACAGTTTGAGTTGTTCACAACTTGGTTCCTTTTGCCGATCTTTGTCACATGTTGTGCCATGAAGATTGATATCTCCGCACAGATGAATAGCCAATTGGTCGTTGCTGTAGTCACAGTAATTGTTATCGTGCATTTGATTAAGATGCTTTTCACTATTGGAATTTGCAGCTACTGCAACATGCCCATAACCGACGGTTTATGCCTTGCTCTCATGTTGAGCTGCAAAGGTGTCGTGGATTATGTCACCAACGTCTTCCTCTTTGATTCAATGTTCTTGAGCAATGAAACGGTTTCCATGATGGCTATATCAATACTGGTGTTGGGAAGCATTGCACGCATCGGGGTGAAATCCCTCTACGACCCAACAAGGAAATACGCATGCTATCAGAAAAGGAACATCCTGAACTTGAAACCCAACGCAGAGTTTCGAGTGGTAGCATGCATCCACAAATCAAGCCACATAATGTCTGTAAAAAACTTTCTTGACATTTGTTGCCCCACAATAAGCAGCCCCTTAGTGGGTCACGTCTTGCATCTGAAGGAACTGGTTGGTAGCTCCTCTCCCATCTTCATATCACACCGTCTTCAAGAAAGGGTTGGCTCAAACCACAACTACTCCGAAGATGTGATCGTAGCATTCGACCTCTTCGAACATGACAGAGCGGGAACTGCGGTAGTTAGCACCTACACGGCCATATCTCCCTTACGTTTCATGCATGACGATATCTGTTACCTTGCATTGGACAAAGTGGCTTCCATCATCATTCTTCCATTTCACGTGAGATGGGATGAGGATGGTTCCATCAGTTCAGCAGATCAAAACATAAGAACTCTCAACGCTAAGGTTCTTAGAAGAGCCCCATGCTCAGTGGGGATTCTAGTGAACCGAGGGTCTTCTTCTTCTTCCTCTACTCACAACAACTGCATCATGACTAATTCAGGGAAACGAATAGCAATGATCTTTCTGGGGGGTTCAGATGATCGAGAGTCGTTGTGCTTGGCTAAGAGGAGCATGAGAGATTGTTCTTGCAACTTGGTGGTGTACCACTTGGTTTGGGCCCACTGTGAGGCAAACTGGGAGATGATGCTTGATGATGAGGTGTTGAAGAGTGTAAGGGGGTACTATGGTAGGCTTGAGAATGTGTCGTATGAACTTGTGACCATTCATCAAGCTTCTGAGACGAGTGCTTTTGTTTCAAGCATTGCAAATCAGCATGATTTCTTCATAGTTGGGAGGCGCCATGGTATGAAATCGCCGGTAACGGCAGCACTTGAGAGTTGGACGGAGTTTTCTGAGTTGGGTGTGATCGGAGATTTGCTTGCTTCCCCCGATAGCAGAACCGATGCTTCAATTCTT 2550 0.4396 MGTNETLVSISNTIFRRVVFDEQNSDRDGRFIIYNVQIDIPPKIVSDGIWGNTDIGALPDKTVVPLLEFQILTIFVVTQCFHLVLKRLGFPYFVSQMMVFIYKQMSSPLSYLCFWNHCILYSSSHYHIVVVCFAIYVCDFQLQTGFVLGPSLKIESLKERKSLLFPYGTEDLLNLVSSLGYTFFMFQNSVQMDFSMITRTGKKAWAIALSSLMIPTVVGLSLCYYFMEHVQKTIGEFDGDNLPVIVIGHSGCSFTVIASLLSDLKILNSELGRLALSAALVMDVINSVVTGLGTSIISHLKTNPHDGSKGPELVMYAVTKYVLFVTTVIMIGRPAMKWIVRNTPEGRPVKKAYTFVVVLMTLLAGLFGMFAHQTVLGGVVLFGLLVPEGPPLGSELIKQFELFTTWFLLPIFVTCCAMKIDISAQMNSQLVVAVVTVIVIVHLIKMLFTIGICSYCNMPITDGLCLALMLSCKGVVDYVTNVFLFDSMFLSNETVSMMAISILVLGSIARIGVKSLYDPTRKYACYQKRNILNLKPNAEFRVVACIHKSSHIMSVKNFLDICCPTISSPLVGHVLHLKELVGSSSPIFISHRLQERVGSNHNYSEDVIVAFDLFEHDRAGTAVVSTYTAISPLRFMHDDICYLALDKVASIIILPFHVRWDEDGSISSADQNIRTLNAKVLRRAPCSVGILVNRGSSSSSSTHNNCIMTNSGKRIAMIFLGGSDDRESLCLAKRSMRDCSCNLVVYHLVWAHCEANWEMMLDDEVLKSVRGYYGRLENVSYELVTIHQASETSAFVSSIANQHDFFIVGRRHGMKSPVTAALESWTEFSELGVIGDLLASPDSRTDASIL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00623 850 Gene3D - 132 524 IPR038770 -
Vimu1g00623 850 Pfam Sodium/hydrogen exchanger family 141 506 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu1g00623 850 PANTHER CATION/H + ANTIPORTER 62 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00623 Vimu-Chr1 3969328 3972081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00623 40 850 Antiporter Super Family AT3G44900 35.364 9.84e-154 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00623 K26731 - gmx:106795756 1141.72