Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00619 ATGGGACGTGGAAGGATACCCATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCATAAGAGAAAGAACGGATTAATAAAGAAAGTTTACGAGTTTTCAACACTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCTTCAAAGTTTCTTGATGAACCTGAAACATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACTACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCGATGAAAGGATGAAAAGGATCGAAGGAGAGATTTCCAAAGTGCAGAAAGAGAAGATCCAGCTCACGTATCCAACCTGGGATGACTCTTACAATACTCTTGAAGAGGAACAGCTGAGGATGTTTGTAAGCATTTTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAACATGTTCAAACGAGATTCAAAGGGAAAAGCAATAGCAGAATCAGACAATGATGAAGCACTTGTTCCTTTGTTGGCTCCAAACCAACAAAGGTTTTTCATGCAGAACATGTCTCAAACACAGGTTTTTCCTACTAATGATAACAATCAAGTACCATTTTATCCATGTCATCTCAGCCAAAGTTCTCTACCTTGTTTGTTTCAATTGGGTCATCAAAACTTCAACCAATTGATAGAAAAAAATATAGCAGTGGATTGGAATAATCAAGTTGGTGCAAGTGATACACAACAGGATAGAACAAACACAAACCAAAACTCATCATCCTGCTATTACAATGCAAATATTCAAACAATGCAGCCTTATAATAATGTTGTTTTGCAAACTCTACCTGCTCAATTGCAGTGCGATTCAACGTTCCAGAGCCTGTCAAATCGACCAGGTCCATCACAAGGATTTCAACCTAATGATGTTTCTGATATGCTTCAACCTCATTTTTTAAACTATATGCACAGAAGAAAGTAG 963 0.3832 MGRGRIPMDLIEKEKARKTTFHKRKNGLIKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFDERMKRIEGEISKVQKEKIQLTYPTWDDSYNTLEEEQLRMFVSILDAKLDACNQRMNMFKRDSKGKAIAESDNDEALVPLLAPNQQRFFMQNMSQTQVFPTNDNNQVPFYPCHLSQSSLPCLFQLGHQNFNQLIEKNIAVDWNNQVGASDTQQDRTNTNQNSSSCYYNANIQTMQPYNNVVLQTLPAQLQCDSTFQSLSNRPGPSQGFQPNDVSDMLQPHFLNYMHRRK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00619 320 PANTHER MADS BOX PROTEIN 3 129 - -
Vimu1g00619 320 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Vimu1g00619 320 CDD MADS 2 51 - -
Vimu1g00619 320 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vimu1g00619 320 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vimu1g00619 320 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vimu1g00619 320 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Vimu1g00619 320 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu1g00619 320 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu1g00619 320 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00619 Vimu-Chr1 3947205 3948167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00619 1 202 Type I MADS-box Gene Family AT5G55690 33.493 3.58e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu1g00619 SRF-TF 3.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00619 - - ccaj:109800518 390.578