Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00616 ATGAGAGTAACGGCTAGAAGATTAGTAGCCGTTGATGTGAGAGAAAATCCAACGCAAACAAGAGAGGTTGCTACTGAGACAGTGCTTGAATCCGCGGTGGCGACAACCGACGAAGGAGCCGAAGAAGAGGGGCGGAACGGTGGTCTTCAGGGCTTTCTGTCGTCGCTGTTCTCCACTCTCGGCGGTGTTTTTAGTTCAACTTTTCAAGAAACACAGCAAAACAACGTTGTTATGGCTTCCATAGCGGAACAACCCAACAAAGGTGAGATTCGTGAGAACAAGCAGAAGAATATGGGTGGTGAAGGAAGAAACAGAAGGGTTCTTCAGGATATTGGGAATCTTGTGGCCAAACAAGGCCATGTTGGCATTAATGTGTCTAAACCTGTGGCAAGGAACTTTCGTGCCCAATTGTTGGCCAATGCACAAGACAAGAACAAGAAGTCAAGCACTGAAGTGGAGAATGCTGCGGTGGTAGCAAAGGTGAAGGCAGCTGAGAAGCCTAAAGAAGAACCTGAAGTGATAGTGATTAGCTCTGATGATGAAACGGAGGAAAAGAAGAAGCAATATGTTCCTAAAACAAACAAGGCAAGGGACAAAAATGCCAAGGCCTTTAGTTCAGTACTCTCTGCTCGAAGCAAGGTTGTCCCATTGGAACCGGTCTTAAACATTGATGCAACTGATACGGACAATGAATTGGCAGCAGCGGACTATATTGATGATATATATGAATTTTACAAAAGTACTGAGAAAGATGGTTGTGTGCATGATTACATGGGTTCGCAGCCAGATATTAATGCCAAGATGAGATCAATCCTTGTGGACTGGTTGATAGAAGTCCATAGAAAATTTGAGCTCATGCCAGAAACTCTCTACTTGACCCTAAACATTGTTGATCGGTTCCTGTCTATGAAGGCCGTGCCTAGAAGGGAACTTCAGCTTGTTGGCATCAGCTCCATGCTGCTAGCCTCAAAATATGAAGAGATATGGGCACCAGAGGTTAATGACTTTGTGTGCATATCAGACAATGCTTATGTCAGTGAACAAGTGCTGTTGATGGAGAAAACAATCCTTAGGAAGCTTGAGTGGTACTTAACGGTTCCCACACCGTATGTCTTCTTGGTTCGGTATATTAAAGCCTCAACTCCATCTGATAAAGAGACGGAATATATGGTGTTTTTCCTTGCTGAACTTGCTATGATGCACTATCCTACCGTAGTCTTGCACTGCCCTTCATTGATTGCTGCTTCTGCTGTGCTTGTGGCTCGATGTACTCTTCAAAGGACTCCTTTCTGGACAAGCACTTTGAAGCATTACACAGGCTACTCTGAGGAGCAACTGAGGGATTGCGCCAAAATCCTGGTCAACCTTCATGCCACTGCTCCAGAAAGTAAGCTCAGGGCAGTTTACAAGAAATACAGTAGCTCAGATTGCTCCTCTGTTGCTCTTCGTCTTCCAGCAAAGAACTTGACCGAACTGTCTTAA 1482 0.4487 MRVTARRLVAVDVRENPTQTREVATETVLESAVATTDEGAEEEGRNGGLQGFLSSLFSTLGGVFSSTFQETQQNNVVMASIAEQPNKGEIRENKQKNMGGEGRNRRVLQDIGNLVAKQGHVGINVSKPVARNFRAQLLANAQDKNKKSSTEVENAAVVAKVKAAEKPKEEPEVIVISSDDETEEKKKQYVPKTNKARDKNAKAFSSVLSARSKVVPLEPVLNIDATDTDNELAAADYIDDIYEFYKSTEKDGCVHDYMGSQPDINAKMRSILVDWLIEVHRKFELMPETLYLTLNIVDRFLSMKAVPRRELQLVGISSMLLASKYEEIWAPEVNDFVCISDNAYVSEQVLLMEKTILRKLEWYLTVPTPYVFLVRYIKASTPSDKETEYMVFFLAELAMMHYPTVVLHCPSLIAASAVLVARCTLQRTPFWTSTLKHYTGYSEEQLRDCAKILVNLHATAPESKLRAVYKKYSSSDCSSVALRLPAKNLTELS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00616 493 CDD CYCLIN_AtCycB-like_rpt1 218 362 - -
Vimu1g00616 493 PIRSF Cyclin_A_B_D_E 65 493 IPR046965 GO:0016538|GO:0044772
Vimu1g00616 493 SMART cyclin_7 371 455 IPR013763 -
Vimu1g00616 493 SMART cyclin_7 274 358 IPR013763 -
Vimu1g00616 493 Pfam Cyclin, N-terminal domain 240 364 IPR006671 -
Vimu1g00616 493 Gene3D - 254 365 - -
Vimu1g00616 493 Pfam Cyclin, C-terminal domain 367 482 IPR004367 -
Vimu1g00616 493 SUPERFAMILY Cyclin-like 229 364 IPR036915 -
Vimu1g00616 493 SUPERFAMILY Cyclin-like 368 488 IPR036915 -
Vimu1g00616 493 FunFam G2/mitotic-specific cyclin-1 355 481 - -
Vimu1g00616 493 SMART Cyclin_C_2 367 486 IPR004367 -
Vimu1g00616 493 PANTHER CYCLINS 186 474 IPR039361 -
Vimu1g00616 493 ProSitePatterns Cyclins signature. 269 300 IPR006671 -
Vimu1g00616 493 Gene3D - 240 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00616 Vimu-Chr1 3937275 3939810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00616 78 486 Core Cell Cycle Gene Families AT2G26760 52.518 8.45e-143 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00616 K21777 - gmx:547782 626.706