Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00605 ATGGCTTTCACACTAGACAGGTGTGAAGACAGCATGGTGTTCACCATGGATTCTCAGAAGTCTGTGCCTGCTCCCTTTCTGACAAAAACATACCAACTTGTTGATGACCCTCTCACTGACCACATTGTGTCTTGGGGTGATGATGAAACCACGTTTGTTGTGAGAAGGCCCCCAGAGTTTGCTAGAGATCTTCTTCCAAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGACAGCTAAATACCTATGTGAGAATAATGCCTTCTGGTTTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGATCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCCTTATCAACAACATTACCATATGCATGACCAACCAGCACAGCTTCTTCAGCCAGATGAGAATCTGTGTTGGATTGATACTCCTCCATTACCATCTCCTAAGCCAGGTAATGATATCTTAACAGCACTTTCTGAGGACAACCAGAGACTGAGAAGAAAGAACTTCATGCTGTTATCAGAACTGACTCACATGAAGAATCTATACAATGATATCATATATTTCATCCAAAACCATGTAAGTCCTGCTTCCTATGAACAAAGAAGCAGCAGTGCTATTCTGAAGCTGGTAGAATTGGAATCATCACCTCAGTCTCCAAATTTGATCAGACCAGCCAAGAGCCATATCATGGAGAAGTCTTTGGTAAGTTCCAGTGATGAGCCTAATGGTTCTGTGAAGCTCTTTGGGGTTCCTCTCTGTGGCAAAAAGAGATTGCACCCAGGTAACCTTGATCAACATGAATAG 837 0.4253 MAFTLDRCEDSMVFTMDSQKSVPAPFLTKTYQLVDDPLTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYVRIMPSGFKKVAADRWEFANEYFRKGSKHLLCEIHRRKTPHPYQQHYHMHDQPAQLLQPDENLCWIDTPPLPSPKPGNDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPASYEQRSSSAILKLVELESSPQSPNLIRPAKSHIMEKSLVSSSDEPNGSVKLFGVPLCGKKRLHPGNLDQHE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00605 278 SMART hsfneu3 22 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00605 278 Pfam HSF-type DNA-binding 26 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00605 278 Gene3D - 18 123 IPR036388 -
Vimu1g00605 278 SUPERFAMILY "Winged helix" DNA-binding domain 23 121 IPR036390 -
Vimu1g00605 278 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00605 278 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00605 278 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00605 278 FunFam Heat stress transcription factor B-4 18 122 - -
Vimu1g00605 278 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 213 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00605 Vimu-Chr1 3833956 3835143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00605 20 270 HSF AT1G46264 49.164 1.33e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu1g00605 HSF_DNA-bind 1.1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00605 K09419 - gmx:100776060 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00605 1 3833956 3835143 Vimu1g00605 1 3833956 3835143 ECH