Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00599 ATGGGCAACTGTTGCTCAGGTGGCACCAATGATTCTGAAAACAAGGGAGAAACCAACCAACAAAACGATAACCAAGGGGGAACGGCAACCACCCCACCACAATCTAAGCCTAACCATCCTCCCACCAAACACTCCAAGCCTGCCCCCATTGGGCCTGTTCTTGGAAGGCCAATGGAGGATGTTAGAAGTACTTACAGCATGGGGAAAGAGCTGGGGAGAGGCCAGTTTGGTGTCACACATTTGTGCACACACAAGAGCACAGGAAAGCAATATGCCTGCAAAACCATTGCCAAGAGAAAGCTTGTTAATAAGGAGGACATTGAGGATGTCAAGAGAGAGGTCCAGATCATGCACCATCTCTCAGGGCAACCCAACATTGTGGAGCTTGTCAGTGTTTTTGAAGACAAGCAATCTGTTCATTTGGTTATGGAGTTGTGTGCTGGGGGTGAGCTCTTTGATCGCATCATTGCAAAGGGACATTACACTGAACGTGCAGCAGCTTCCCTCTTGAGAACCATCGTCCAGATTGTCCACACCTGCCATTCCATGGGAGTCATTCACAGAGATCTTAAGCCTGAAAATTTCCTTCTCGCCAGCAAGGAGGAAAATGCACCTCTCAAGGCAACCGATTTCGGTCTCTCTGTTTTTTACAAGCAAGGAGAGCTGTTTAAGGACATTGTTGGAAGCGCATATTACATTGCACCAGAGGTCTTGAAGAGGAAATATGGTCCAGAAGTTGACATTTGGAGTATTGGTGTCATGCTATACATTCTTCTATCTGGTGTTCCACCATTTTGGGCAGAATCCGAAAATGGAATATTCAAGGCAATTCTGCGAGGTCATATAGACTTTACAAGCGATCCATGGCCATCCATTTCGCCTGCAGCAAAAGATCTCGTAAGGAAAATGTTGAATTCGGACCCCAGACAGAGGCTGACAGCGTACGAAGTTCTGAATCACCCATGGATCAAGGAGGATGGAGAAGCACCAGATAAACCTCTTGACAACGCAGTACTGAATAGGCTCAAGCAGTTCAGAGCAATGAACGAATTCAAGAAAGTTGCTCTAAGGGTCATCGCGGGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTCAAGGGTATGGACACTGACAACAGCGGCACCATTACAATTGAAGAGCTCAAACAAGGGCTTGCAAAACAAGGGACCAAGCTAACAGAACAAGAAGTCAAGCAATTAATGGAAGCTGCAGATGCCGATGGCAATGGAACCATTGATTACGATGAATTCATCACAGCAACAATGCACATGAACCGCATGAACAAAGAAGATCATCTTTATACTGCCTTCCAATACTTTGACAAAGATAACAGCGGGTACATTACCATTGAAGAACTAGAACAGGCTCTTATTGAGTTCAACATGCACGATGGTAGGGACATCAAGGATATCATTTCAGAAATTGATGCAGATAATGATGGCCGGATTAACTACGATGAATTTGCTGCAATGATGAACAAAGGAAACATAGAAGTTCATACCAAGAAGAGGCGTGATTCAACCTTATATTAG 1563 0.4504 MGNCCSGGTNDSENKGETNQQNDNQGGTATTPPQSKPNHPPTKHSKPAPIGPVLGRPMEDVRSTYSMGKELGRGQFGVTHLCTHKSTGKQYACKTIAKRKLVNKEDIEDVKREVQIMHHLSGQPNIVELVSVFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLASKEENAPLKATDFGLSVFYKQGELFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLSGVPPFWAESENGIFKAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPRQRLTAYEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNEFKKVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNKEDHLYTAFQYFDKDNSGYITIEELEQALIEFNMHDGRDIKDIISEIDADNDGRINYDEFAAMMNKGNIEVHTKKRRDSTLY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00599 520 SMART efh_1 477 505 IPR002048 GO:0005509
Vimu1g00599 520 SMART efh_1 406 434 IPR002048 GO:0005509
Vimu1g00599 520 SMART efh_1 442 470 IPR002048 GO:0005509
Vimu1g00599 520 SMART efh_1 370 398 IPR002048 GO:0005509
Vimu1g00599 520 Gene3D Transferase(Phosphotransferase) domain 1 151 331 - -
Vimu1g00599 520 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00599 520 MobiDBLite consensus disorder prediction 1 58 - -
Vimu1g00599 520 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Vimu1g00599 520 MobiDBLite consensus disorder prediction 1 33 - -
Vimu1g00599 520 FunFam Calcium-dependent protein kinase 1 331 506 - -
Vimu1g00599 520 FunFam calcium-dependent protein kinase 1 151 330 - -
Vimu1g00599 520 Gene3D - 364 432 - -
Vimu1g00599 520 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Vimu1g00599 520 ProSiteProfiles EF-hand calcium-binding domain profile. 477 508 IPR002048 GO:0005509
Vimu1g00599 520 Pfam EF-hand domain pair 441 502 IPR002048 GO:0005509
Vimu1g00599 520 Pfam EF-hand domain pair 371 431 IPR002048 GO:0005509
Vimu1g00599 520 ProSitePatterns Protein kinases ATP-binding region signature. 71 98 IPR017441 GO:0005524
Vimu1g00599 520 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Vimu1g00599 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 498 - -
Vimu1g00599 520 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Vimu1g00599 520 SUPERFAMILY Protein kinase-like (PK-like) 43 349 IPR011009 -
Vimu1g00599 520 FunFam Calcium-dependent protein kinase 1 67 150 - -
Vimu1g00599 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vimu1g00599 520 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Vimu1g00599 520 Gene3D - 341 502 - -
Vimu1g00599 520 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Vimu1g00599 520 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Vimu1g00599 520 SUPERFAMILY EF-hand 363 504 IPR011992 -
Vimu1g00599 520 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00599 520 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00599 520 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Vimu1g00599 520 CDD STKc_CAMK 65 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00599 Vimu-Chr1 3806528 3809180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00599 1 519 EF-hand Containing Proteins AT5G12180 78.368 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu1g00599 Pkinase 2.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00599 K13412 - gmx:100820422 980.319