Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00587 ATGAGTGGCGTCATAAATCAAGCACTTTCAGTTGTGGCTACTACAAGGAGGTTATCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGGGACTGGTTCTTCTGCTGCTGCTGCCGGTGGCCGTGCTGTCCCCGTGGACGACCTCTCCCTTGGTTTCAATGCTGGTCCTGCCGCCCCAGCAGCAGCCACCGGACCCACCACCGGAATGTGGTCCGGTGCCAATAGGTCGATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCCTCTTTCCACCACCATCACCACCACCAACAACAGCCCCCGCACGACCCCGTCATGGCAGATTCCCTCAACCCCGCCACTGCACTCGGCGTCGGCGTCATCCCTCTTCTTGCCGCCACGCCGTGTCTGGAATCCGACAACTTCCTCGGCAACAGGCCACGTGGTGGGGGAATTCAGTTTTGGCAAGACCAAGGGCCCCATCAGAGCCACTATATGAAGAAACAGCAACAGCAGGGGCTTCTCGACCAAAGTAACACTAGTTCTGGAAACTTGGTTCAAACCAGTGGCGGCTTAACTGCTTCGGGTACCAGTAGTGGGGGAACTACGTGCCAAGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACTTGCTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACTGCGGCCACTGCGGCGGTCGCTGGTTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGGCTTATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCCAGAAGCTTTGACACAAGCTCTAGCCATCAAGATGCGGGCTTCAAGGAGTCATTACCTGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTACGCGTACCAGGCTGTGGTGAAGATTGGTGGGCACGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAACGGCGGAAGTGGAAGCGGAGGAAGTGGTGGGGTGGGGAGAAATGGGGTGTCTTCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGCAGGTTCTGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAATTGA 1260 0.5476 MSGVINQALSVVATTRRLSSDSGAFADWAGTGSSAAAAGGRAVPVDDLSLGFNAGPAAPAAATGPTTGMWSGANRSINYPEMGMFVVAPASSFHHHHHHQQQPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNFLGNRPRGGGIQFWQDQGPHQSHYMKKQQQQGLLDQSNTSSGNLVQTSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSSPMMDPSDVYAGSGGGLLGGSSAYGNPMN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00587 419 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 91 401 IPR007818 GO:0003700|GO:0006355
Vimu1g00587 419 MobiDBLite consensus disorder prediction 248 306 - -
Vimu1g00587 419 NCBIfam LRP1 C-terminal domain 306 353 IPR006511 -
Vimu1g00587 419 MobiDBLite consensus disorder prediction 381 396 - -
Vimu1g00587 419 NCBIfam putative zinc finger domain, LRP1 type 199 241 IPR006510 -
Vimu1g00587 419 MobiDBLite consensus disorder prediction 152 207 - -
Vimu1g00587 419 Pfam Domain of unknown function (DUF702) 197 354 - -
Vimu1g00587 419 MobiDBLite consensus disorder prediction 369 419 - -
Vimu1g00587 419 MobiDBLite consensus disorder prediction 251 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00587 Vimu-Chr1 3664027 3666422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00587 8 399 C2H2 Transcription Factor Family AT5G12330 49.292 7.07e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu1g00587 DUF702 1.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00587 - - gmx:100817745 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00587 1 3664027 3666422 Vimu1g00587 1 3664027 3666422 ECH