Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00584 ATGCAAAGATTGATTGGAAGACGCGAGCAAAGAAAATCCGACATAAGACGAATTGAATTTGTTTCTTCTCGCTCTGTCTTTCCACCTTCACCAGAAGCTCCTTTCTCTGTTCCTAAGCGGAGTTGTTGTAATGGTGGGTGTGCCTCCAAGCTCCTCAATTTGGGGTATTTGTGGTCTGGAAAAGTGAGTCAAACTGAAGGGTTCAAATGGGGTTTGGTTGATTTTGATCATAAAGTTTTATTTTCCTCTTTCGATGACCATGAATTGGTGTCTACTGTTGGATCTACTTTCCGTGTTGAATTTTTGGAATTAGGCTTTGTTGTTGTTGTTCTTCTTCTTCTTTTTCTTCTTTCACTTGCACTTGGTCTTGATTGGCACAAATCGTGGAATGAGCAGCAGGTAAACTGGCCAGTTTTGAGAAATGAGCTGGCTGTGTCAAACTTGTATCATGTGACAAATGATATTATGGTAGAGCACAAGTACCCCACAGAGGAAATGAAAGTAGAACTTGCTGAGAAGTTAGGATTGACAGAAAAGCAAATATCTGGGTGGTTTTGCCACAGAAGGTTAAAGGATAAAAGATTGATGAAAGACGAAGCCGTCGCTAACGGACGGCAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCTTGTGGAAGCAGTAAACATGCTGATTACAGGTATCTGGATGCTAAGGAGGTTGAGAGCCACGACTTCTACAACAACGAAATATCTGTTGCAGACATGACACACAGACGTAGGAACCATTATGCTGAAAATGTTAGTGTAGTGGATGACACATCATCTGAGAGCAGCTCCTTTTTGCAAGAAAGGGCTTTTGCTCAAGGTCAGGATCCATATGATATGGAGCCTTCTAGACATCTTACACCTAACGGAGCTCTACCACCCCTGAATCCCAAAGGTGCAGTTAACCTGGGATACAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCAGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTACGAGGAAGATGGTCCACTACTTGGTATAGAATTTGATCCGCTTCCTCCAGGGGCCTTTGAGTGTCAAACTGAAGATCCAGCTAATGGTAGTGTCATGTCAAAAAGAGTGTTGGACCCGGCAATGTGCTATTCCGTAGAGGTGCTGAGATATGATTCGCATTATACTAAATTGAATTCCCAAGATTTGCATATGGAACGAGCTGATTTTGGCTCCTTGCATGAATCTGATTTCCAGGATAAACAAGATAAGAAAGCCCGTCAGAATATAAAACAAAGGCAACCTTACTACGGTTATACCAATCATGTTTCGGGAAGGAACCCTTTCCCAGATTTGTATGAAGATTCTACTGGAGAAGCATCTGGCTATAACAGTGCTAAGAATCATAGAATGAGCACTAAGCACGGGGTTGAGGGGATGCGATCTGATTCTGCTTCCAACCACAGTGATCACTTTGAGGAGAAGCTTGCGGTTAAGACGAAAGACTTGATGCTGCACGCTTATGATAAGATCAATCCAAAGAGAATACAAAAGAGTGGACATGTGAAATCTAAACCTTCTAGTTCAATCCGAAATTCCCGTGTTCCCATAGATACTGAAGAAAGGGGATTATCTGCTAGGATGGCAGAGGAAGAGATGTTTAAGGTGGACCAGAAAGCAAAAAATACATACCGCAACGTAGATGGAGCAGGGAGGCTTTCAAATGAAATTCTGGTTGCAAAGAGAGCTAAAGTTGACATGCTTCAACAATACCATGTGAAACCATCACCTGTTGCTGAGATGGAGAAAAGGAAAATTCACAGATCTGCTGCAGAGATGCCTTCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCATTAGATTATTAA 1920 0.4229 MQRLIGRREQRKSDIRRIEFVSSRSVFPPSPEAPFSVPKRSCCNGGCASKLLNLGYLWSGKVSQTEGFKWGLVDFDHKVLFSSFDDHELVSTVGSTFRVEFLELGFVVVVLLLLFLLSLALGLDWHKSWNEQQVNWPVLRNELAVSNLYHVTNDIMVEHKYPTEEMKVELAEKLGLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDAKEVESHDFYNNEISVADMTHRRRNHYAENVSVVDDTSSESSSFLQERAFAQGQDPYDMEPSRHLTPNGALPPLNPKGAVNLGYKPSGYLKVKGEIEHAAITAVKKQLGRHYEEDGPLLGIEFDPLPPGAFECQTEDPANGSVMSKRVLDPAMCYSVEVLRYDSHYTKLNSQDLHMERADFGSLHESDFQDKQDKKARQNIKQRQPYYGYTNHVSGRNPFPDLYEDSTGEASGYNSAKNHRMSTKHGVEGMRSDSASNHSDHFEEKLAVKTKDLMLHAYDKINPKRIQKSGHVKSKPSSSIRNSRVPIDTEERGLSARMAEEEMFKVDQKAKNTYRNVDGAGRLSNEILVAKRAKVDMLQQYHVKPSPVAEMEKRKIHRSAAEMPSSFSEDETAETSSSLDY 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00584 639 SMART HOX_1 122 199 IPR001356 GO:0003677
Vimu1g00584 639 SUPERFAMILY Homeodomain-like 158 202 IPR009057 -
Vimu1g00584 639 ProSiteProfiles 'Homeobox' domain profile. 158 195 IPR001356 GO:0003677
Vimu1g00584 639 MobiDBLite consensus disorder prediction 623 639 - -
Vimu1g00584 639 Gene3D - 156 211 - -
Vimu1g00584 639 MobiDBLite consensus disorder prediction 201 227 - -
Vimu1g00584 639 MobiDBLite consensus disorder prediction 207 225 - -
Vimu1g00584 639 CDD homeodomain 158 194 IPR001356 GO:0003677
Vimu1g00584 639 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 147 638 - -
Vimu1g00584 639 Pfam Homeodomain 158 194 IPR001356 GO:0003677
Vimu1g00584 639 MobiDBLite consensus disorder prediction 422 438 - -
Vimu1g00584 639 MobiDBLite consensus disorder prediction 607 639 - -
Vimu1g00584 639 MobiDBLite consensus disorder prediction 422 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00584 Vimu-Chr1 3602961 3607844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00584 143 638 Homeobox Transcription Factor Family AT4G03250 37.452 2.36e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu1g00584 Homeodomain 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00584 - - gmx:100803515 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00584 1 3602961 3607844 Vimu1g00584 1 3602961 3607844 ECH