Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00576 ATGGCTTTCTTCAGGAACTTTACAAATGATACAGTCTCCCATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCAAATAGAACTCATAGATCAGTAGGTAATGAGTGTACTGATGCAACTTCTAGCGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAAAGTGAAGGCGAACCAAATGGTTCTGGGAGACTGCAAACTGAGGCAACAATGGATGACAGAGATGCTGTGAAAGACTCAAACTTGCAGACTGCTGGTAGTAAAACAGCTACTATGGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGTGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGTTCAGATTATAGAAATGCTGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCAGAAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGTCCCAGAGGTCTCTCAGATGTTCCTGCAGAAGAGATGTTGTCGGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTGCATTACGGTGGTATCAAAAAGCCATCTGAATCAAATTCATGGCCACAACGGATGTCATCCACTGCAAATAGAACTTTGCATAGGAATTCAAGGTTTTCAGACGATGCTGAAGAAGATGACGATGATGATGGAGATAATGATAACGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCTGATGAAGATGACCCTGATGATGCAGACTTTGAGCCTGCCACAATTGGCCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGACAGTGATGAAAATATAGTTGTCTCAGATGATGATGAGTCTTTCTATGCAAAACGGCCTAAAGGAAGGCAACGAGGTAAGATTGGACAAAGCATAAAATCTACCAGAGATCGCAAAGCGTATGCTGTGTCTGGACGGCAAAGAAGACTTAAATCATCATTTGAGGACAATGAGTCAACAACTGAGGATTCTGACAATGACAGTGATGAGGATTTCAAAAGCTCAAAAAAGCGGGGTGTTCATGCTCGCAAAAATAATGGTCGTTCTTCTTCAGTTACAGGCCTTTCTATGCGCAACAGTGAGGTTCGGACGTCTAGTAGGACTGTTAGGAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTCGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAATTGATGAGGAAGATAGTGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCACAGCAGAAGATGCCGAAAGGAATAACCGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAATGGAAATCTTTTGCGGAGCTGCAAAACCTCAGTGGTTCTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTATAGGAGGTCAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATAAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCTGGCGATGTTATTCCAGAATACTTGGTCAAGTGGCATGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACACTGATATTGCTTTTGCCCAAAATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCAGCAGTTCAAGGAAAGATGGTGGATTCTCAGCGTAAGAAAAGTAAAGCAAGCTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAACTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTCTCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCGCTCTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGAAATGAATATTATCATATATGTTGGTACTCGAGCTAGTCGAGAGGTTTGTCAACTGTATGAATTTTATAATGAAAAAAGACCCGGGAAGCCAATAAAATTCAATGCACTTTTGACGACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTGTCCAAAATCAAATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCCTTACTTCATTTCCTCGATCCTGATAAGTTCAGGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTGAAGTTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCTCCCAAAATTGAACGTATCCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGGGATTCGGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTTTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATCAACCTTGCCACAGCCGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAATTGAATGCAGAGGGTAGATTGGAGAAGAAAGAAGCCAAAAAAGGAGGCAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGATGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATAAAACCCGATTCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCAGAAAAAACTAATAAAAGAAAAAAGAAGGAAGCTGAACCACCTGAACGAGTTCAGAAACGTCGGAAACCAGATTATTCTGCTCCTGCAGTACCGATGATTGAAGGAGCATGTGTTCAAGTGAGAAGTTGGTCATATGGCAATTTATCTAAAAGAGACGCGCTTCGTTTTTCTCGTTCTGTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGCTGCCGAGGTGGGTGGTGCTGTTGGTGCGGCTCCAACTGGAGCACAGGTTGAACTTTTCAATGCTTTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGATCGATATGATGATCCTATTGCACAATTTCGTGTTCTGTCTTATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTTCCATGGTTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGGCTCACGAAAAAAATTGCACCAGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGACCGTGCTAATGCCCTTTTGGAGCAAACACTTATATCCCCAATTACCAAGGTTTTTACTAGCAAGAAGAGAAGAGCTGGAGAAGTTACCGTAGTAGTTGGGGGTGGTCATAATGAACTTGCTGTTCTTGGTGTGAAAAATGCCAATAGCAAAGTCGGACGGAAGCCTTCAAAGAAAGAGCGAGATAATATCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCAGGTTCTGTTAATGTCCAAATGAGAAAGGAAAGATTTCAAAAACCGCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAACAGTTTAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTCGATGAAATGAAGACTTTGAAACGTCTTCACAGATTGCAGCAAACTAGTGCCAATCTTCCCAAGGAGAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTCGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAGCCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATACGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGTGTTGGCCCTTCTCACGGCAATGGATCGGTATCTGCTTCATTTACCAGAAACGGAAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGAGTACATATCAAACGCCAGAACCAGTTGATAATAGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCACCTCAAAGGACCGTAAGTAATGGACTCAGGATTACTGATCCTAACTCACTTGGGATACTTGGTGCCGGTCCCTCGGATAAACGCTTTGCTAATGAGAAACCTTACAGGACGCAACCTGGGCTTCTCTTCAGGTATAAAGTAACCAGGTTGGTGGGATTTGAGTGGCTGATTATAAGTGTTGGTGGATGGATTTCCCTCTGCATTTATACAGCTTCAGCTATTGTACATTCTGTGGAAATTTTTTCTTCCACCCATGGGAATAAGATCTTGCGGATCCCTTTTTGGTGTCTTTTGGCGGATATGAGAAATATCCCTACACTGGGATTCACATCTTTGAACAAAATGGCTGAAGCCCAAAAGATCTATAATGCAAGATGA 5547 0.411 MAFFRNFTNDTVSHGVMEDKSQGQNANRTHRSVGNECTDATSSEKEFDMNMEAQYESEGEPNGSGRLQTEATMDDRDAVKDSNLQTAGSKTATMGRWGSTFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRAERLDSDDDDGQKEAGKGPRGLSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPSESNSWPQRMSSTANRTLHRNSRFSDDAEEDDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATIGHAGNKDKDWEGEGSDEDDDSDENIVVSDDDESFYAKRPKGRQRGKIGQSIKSTRDRKAYAVSGRQRRLKSSFEDNESTTEDSDNDSDEDFKSSKKRGVHARKNNGRSSSVTGLSMRNSEVRTSSRTVRKVSYVESEESEEVDEGKKKKSQKEEIDEEDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGSKKVLNYTKKIMEDMRYRRSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGDVIPEYLVKWHGLSYAEATWEKDTDIAFAQNAIDEYKAREAAMAAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPEMNIIIYVGTRASREVCQLYEFYNEKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLKLRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSEKTNKRKKKEAEPPERVQKRRKPDYSAPAVPMIEGACVQVRSWSYGNLSKRDALRFSRSVMKYGNESQIDLIAAEVGGAVGAAPTGAQVELFNAFIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIDRYDDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQTLISPITKVFTSKKRRAGEVTVVVGGGHNELAVLGVKNANSKVGRKPSKKERDNIISLVRGQEKKKKSGSVNVQMRKERFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVDEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSASFTRNGNPFRRHMERQRGLKNMSTYQTPEPVDNSGKSEAWKRRRRAESDNQFQGQPPPQRTVSNGLRITDPNSLGILGAGPSDKRFANEKPYRTQPGLLFRYKVTRLVGFEWLIISVGGWISLCIYTASAIVHSVEIFSSTHGNKILRIPFWCLLADMRNIPTLGFTSLNKMAEAQKIYNAR 1848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00576 1848 SMART chromo_7 423 505 IPR000953 -
Vimu1g00576 1848 SMART chromo_7 535 594 IPR000953 -
Vimu1g00576 1848 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 848 1078 - -
Vimu1g00576 1848 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 937 1088 IPR001650 -
Vimu1g00576 1848 Coils Coil 1131 1151 - -
Vimu1g00576 1848 SMART helicmild6 963 1047 IPR001650 -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 367 393 - -
Vimu1g00576 1848 SMART DUF4208_2 1541 1646 IPR025260 -
Vimu1g00576 1848 ProSiteProfiles Chromo and chromo shadow domain profile. 424 512 IPR000953 -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 196 214 - -
Vimu1g00576 1848 Pfam Domain of unknown function (DUF4208) 1553 1645 IPR025260 -
Vimu1g00576 1848 SUPERFAMILY Chromo domain-like 516 592 IPR016197 -
Vimu1g00576 1848 CDD SF2_C_SNF 923 1058 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1 447 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1208 1236 - -
Vimu1g00576 1848 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 814 IPR014001 -
Vimu1g00576 1848 CDD CD2_tandem 535 591 - -
Vimu1g00576 1848 SUPERFAMILY Chromo domain-like 420 504 IPR016197 -
Vimu1g00576 1848 CDD CD1_tandem 422 502 - -
Vimu1g00576 1848 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 186 1705 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1206 1237 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1716 1733 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1650 1733 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 126 157 - -
Vimu1g00576 1848 ProSiteProfiles Chromo and chromo shadow domain profile. 537 601 IPR000953 -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 275 292 - -
Vimu1g00576 1848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1123 IPR027417 -
Vimu1g00576 1848 Gene3D - 539 591 - -
Vimu1g00576 1848 Pfam SNF2-related domain 649 905 IPR000330 GO:0005524|GO:0140658
Vimu1g00576 1848 FunFam protein CHROMATIN REMODELING 5 isoform X2 539 591 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1701 1715 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1685 1699 - -
Vimu1g00576 1848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 838 IPR027417 -
Vimu1g00576 1848 SMART ultradead3 626 826 IPR014001 -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 394 446 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 82 96 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 312 340 - -
Vimu1g00576 1848 Coils Coil 1077 1097 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 222 257 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 105 125 - -
Vimu1g00576 1848 Gene3D - 848 1078 IPR027417 -
Vimu1g00576 1848 Gene3D - 1344 1449 - -
Vimu1g00576 1848 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 760 769 IPR002464 -
Vimu1g00576 1848 Gene3D - 621 847 IPR038718 -
Vimu1g00576 1848 Pfam Helicase conserved C-terminal domain 934 1047 IPR001650 -
Vimu1g00576 1848 Gene3D - 409 537 - -
Vimu1g00576 1848 MobiDBLite consensus disorder prediction 1 40 - -
Vimu1g00576 1848 Pfam Chromo (CHRromatin Organisation MOdifier) domain 538 592 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00576 Vimu-Chr1 3543421 3560715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00576 652 1074 RAD5 or RAD16-like Gene Family AT1G02670 25.000 8.88e-34 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu1g00576 SNF2_N 1.1e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00576 K11367 - gmx:100792398 3002.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00576 1 3543421 3560715 Vimu1g00576 1 3543421 3560715 ECH