Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu1g00576 | ATGGCTTTCTTCAGGAACTTTACAAATGATACAGTCTCCCATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCAAATAGAACTCATAGATCAGTAGGTAATGAGTGTACTGATGCAACTTCTAGCGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAAAGTGAAGGCGAACCAAATGGTTCTGGGAGACTGCAAACTGAGGCAACAATGGATGACAGAGATGCTGTGAAAGACTCAAACTTGCAGACTGCTGGTAGTAAAACAGCTACTATGGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGTGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGTTCAGATTATAGAAATGCTGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCAGAAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGTCCCAGAGGTCTCTCAGATGTTCCTGCAGAAGAGATGTTGTCGGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTGCATTACGGTGGTATCAAAAAGCCATCTGAATCAAATTCATGGCCACAACGGATGTCATCCACTGCAAATAGAACTTTGCATAGGAATTCAAGGTTTTCAGACGATGCTGAAGAAGATGACGATGATGATGGAGATAATGATAACGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCTGATGAAGATGACCCTGATGATGCAGACTTTGAGCCTGCCACAATTGGCCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGACAGTGATGAAAATATAGTTGTCTCAGATGATGATGAGTCTTTCTATGCAAAACGGCCTAAAGGAAGGCAACGAGGTAAGATTGGACAAAGCATAAAATCTACCAGAGATCGCAAAGCGTATGCTGTGTCTGGACGGCAAAGAAGACTTAAATCATCATTTGAGGACAATGAGTCAACAACTGAGGATTCTGACAATGACAGTGATGAGGATTTCAAAAGCTCAAAAAAGCGGGGTGTTCATGCTCGCAAAAATAATGGTCGTTCTTCTTCAGTTACAGGCCTTTCTATGCGCAACAGTGAGGTTCGGACGTCTAGTAGGACTGTTAGGAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTCGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAATTGATGAGGAAGATAGTGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCACAGCAGAAGATGCCGAAAGGAATAACCGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAATGGAAATCTTTTGCGGAGCTGCAAAACCTCAGTGGTTCTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTATAGGAGGTCAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATAAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCTGGCGATGTTATTCCAGAATACTTGGTCAAGTGGCATGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACACTGATATTGCTTTTGCCCAAAATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCAGCAGTTCAAGGAAAGATGGTGGATTCTCAGCGTAAGAAAAGTAAAGCAAGCTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAACTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTCTCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCGCTCTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGAAATGAATATTATCATATATGTTGGTACTCGAGCTAGTCGAGAGGTTTGTCAACTGTATGAATTTTATAATGAAAAAAGACCCGGGAAGCCAATAAAATTCAATGCACTTTTGACGACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTGTCCAAAATCAAATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCCTTACTTCATTTCCTCGATCCTGATAAGTTCAGGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTGAAGTTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCTCCCAAAATTGAACGTATCCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGGGATTCGGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTTTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATCAACCTTGCCACAGCCGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAATTGAATGCAGAGGGTAGATTGGAGAAGAAAGAAGCCAAAAAAGGAGGCAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGATGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATAAAACCCGATTCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCAGAAAAAACTAATAAAAGAAAAAAGAAGGAAGCTGAACCACCTGAACGAGTTCAGAAACGTCGGAAACCAGATTATTCTGCTCCTGCAGTACCGATGATTGAAGGAGCATGTGTTCAAGTGAGAAGTTGGTCATATGGCAATTTATCTAAAAGAGACGCGCTTCGTTTTTCTCGTTCTGTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGCTGCCGAGGTGGGTGGTGCTGTTGGTGCGGCTCCAACTGGAGCACAGGTTGAACTTTTCAATGCTTTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGATCGATATGATGATCCTATTGCACAATTTCGTGTTCTGTCTTATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTTCCATGGTTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGGCTCACGAAAAAAATTGCACCAGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGACCGTGCTAATGCCCTTTTGGAGCAAACACTTATATCCCCAATTACCAAGGTTTTTACTAGCAAGAAGAGAAGAGCTGGAGAAGTTACCGTAGTAGTTGGGGGTGGTCATAATGAACTTGCTGTTCTTGGTGTGAAAAATGCCAATAGCAAAGTCGGACGGAAGCCTTCAAAGAAAGAGCGAGATAATATCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCAGGTTCTGTTAATGTCCAAATGAGAAAGGAAAGATTTCAAAAACCGCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAACAGTTTAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTCGATGAAATGAAGACTTTGAAACGTCTTCACAGATTGCAGCAAACTAGTGCCAATCTTCCCAAGGAGAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTCGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAGCCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATACGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGTGTTGGCCCTTCTCACGGCAATGGATCGGTATCTGCTTCATTTACCAGAAACGGAAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGAGTACATATCAAACGCCAGAACCAGTTGATAATAGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCACCTCAAAGGACCGTAAGTAATGGACTCAGGATTACTGATCCTAACTCACTTGGGATACTTGGTGCCGGTCCCTCGGATAAACGCTTTGCTAATGAGAAACCTTACAGGACGCAACCTGGGCTTCTCTTCAGGTATAAAGTAACCAGGTTGGTGGGATTTGAGTGGCTGATTATAAGTGTTGGTGGATGGATTTCCCTCTGCATTTATACAGCTTCAGCTATTGTACATTCTGTGGAAATTTTTTCTTCCACCCATGGGAATAAGATCTTGCGGATCCCTTTTTGGTGTCTTTTGGCGGATATGAGAAATATCCCTACACTGGGATTCACATCTTTGAACAAAATGGCTGAAGCCCAAAAGATCTATAATGCAAGATGA | 5547 | 0.411 | MAFFRNFTNDTVSHGVMEDKSQGQNANRTHRSVGNECTDATSSEKEFDMNMEAQYESEGEPNGSGRLQTEATMDDRDAVKDSNLQTAGSKTATMGRWGSTFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRAERLDSDDDDGQKEAGKGPRGLSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPSESNSWPQRMSSTANRTLHRNSRFSDDAEEDDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATIGHAGNKDKDWEGEGSDEDDDSDENIVVSDDDESFYAKRPKGRQRGKIGQSIKSTRDRKAYAVSGRQRRLKSSFEDNESTTEDSDNDSDEDFKSSKKRGVHARKNNGRSSSVTGLSMRNSEVRTSSRTVRKVSYVESEESEEVDEGKKKKSQKEEIDEEDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGSKKVLNYTKKIMEDMRYRRSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGDVIPEYLVKWHGLSYAEATWEKDTDIAFAQNAIDEYKAREAAMAAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPEMNIIIYVGTRASREVCQLYEFYNEKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLKLRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSEKTNKRKKKEAEPPERVQKRRKPDYSAPAVPMIEGACVQVRSWSYGNLSKRDALRFSRSVMKYGNESQIDLIAAEVGGAVGAAPTGAQVELFNAFIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIDRYDDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQTLISPITKVFTSKKRRAGEVTVVVGGGHNELAVLGVKNANSKVGRKPSKKERDNIISLVRGQEKKKKSGSVNVQMRKERFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVDEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSASFTRNGNPFRRHMERQRGLKNMSTYQTPEPVDNSGKSEAWKRRRRAESDNQFQGQPPPQRTVSNGLRITDPNSLGILGAGPSDKRFANEKPYRTQPGLLFRYKVTRLVGFEWLIISVGGWISLCIYTASAIVHSVEIFSSTHGNKILRIPFWCLLADMRNIPTLGFTSLNKMAEAQKIYNAR | 1848 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu1g00576 | 1848 | SMART | chromo_7 | 423 | 505 | IPR000953 | - | |
| Vimu1g00576 | 1848 | SMART | chromo_7 | 535 | 594 | IPR000953 | - | |
| Vimu1g00576 | 1848 | FunFam | Chromodomain-helicase-DNA-binding protein 2 isoform 1 | 848 | 1078 | - | - | |
| Vimu1g00576 | 1848 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 937 | 1088 | IPR001650 | - | |
| Vimu1g00576 | 1848 | Coils | Coil | 1131 | 1151 | - | - | |
| Vimu1g00576 | 1848 | SMART | helicmild6 | 963 | 1047 | IPR001650 | - | |
| Vimu1g00576 | 1848 | MobiDBLite | consensus disorder prediction | 367 | 393 | - | - | |
| Vimu1g00576 | 1848 | SMART | DUF4208_2 | 1541 | 1646 | IPR025260 | - | |
| Vimu1g00576 | 1848 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 424 | 512 | IPR000953 | - | |
| Vimu1g00576 | 1848 | MobiDBLite | consensus disorder prediction | 196 | 214 | - | - |
Showing 1 to 10 of 48 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu1g00576 | K11367 | - | gmx:100792398 | 3002.23 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu1g00576 | 1 | 3543421 | 3560715 | Vimu1g00576 | 1 | 3543421 | 3560715 | ECH |
Showing 1 to 1 of 1 entries