Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00572 ATGGGAACTTCAACTCTTGGTCTTGTACTTGTACCACTTCTTTTGTGCTTTGCTTCTGTTTCCTCTCTTCCCATGTCTCTGAGAAGGCAAGCCTCTATCTTGGTTTCCCTCAAACAAGATTTTCAGGCTAACACTGATTCTCTCAGAAGCTGGGACATGACAAATAGTGTGTCCCTTTGCACTTGGGAGGGCATTGAGTGTGACCAAAAGAATAGGTCAGTGGTGTCATTGGACATAACCAACCTCAACCTTTCTGGCACACTTTCACCTTCCATCACAGCACTCAGGAGCCTTGAGAGTGTATCACTTGCTGGGAATGGCTTCTCAGGAGGGTTCCCTAGTGATATTCACAAGCTGGCAGGGCTGAGATTCCTCAACATATCCGCCAACAAGTTCAGTGGAGACATGAATTGGGAGTTCTCTATGTTGAAAGAGCTTGAGGTGCTGGATGCTTATGACAACGAGTTCAACTGCTCCCTCCCTCTTGGTGTCACTCAGCTCCCCAAGCTCAATACCTTGAATTTTGGCGGGAATTTTTTCTATGGTGAAATCCCTCCAAGCTATGGAGACATGGTTCAGCTCAACTTTCTGTCTCTTGCCGGAAATGATTTGAGGGGTGTCATACCATCTGAGCTTGGGAATCTCACTAACCTGACACAGCTTTTCTTGGGATACTACAATCAGTTTGATGGTGGAATCCCTCCTCAGTTTGGTAAGTTGGTTAATTTGACTCATCTTGACCTTGCAAGCTGTGGTTTGACAGGTCCAATTCCGGCTGAGTTGGGAAATCTCAACAAATTAGACACTCTCTTTTTGCAAACTAATCAGCTCAGTGGCTCAATCCCTCCCCAACTAGGCAACATGAGTGGCATGAAGTGTCTTGATCTGTCAAACAATGAGCTAACAGGAGACATCCCCAATGAGTTTTCAGGCCTTCACCAACTCACCCTCTTGAACTTGTTCATCAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCGGAGCTGCCTAACTTGGAAGTGCTGAAGCTTTGGCAGAACAACTTCACAGGGGCAATTCCCCCAAGACTTGGCCAAAATGGTAAACTGGTTGAGCTTGACCTGTCAACAAACAAGCTCACTGGATTGGTGCCTAAATCTCTTTGCCTTGGGAGGAGGCTGAGGATTTTGATTCTGCTCAACAATTTTCTCTTTGGATCTTTGCCGGCTGATATTGGCCAATGCTACACACTACAGAGAGTTCGTTTGGGACAGAACTATTTGACAGGGTCAATACCAAATGGTTTTCTGCACTTGCCTGAGTTAGATCTTTTAGAATTGCAGAACAATTACCTCAGTGGTTGGCTTCCACAGGAGACAAACACTGCACCGTCTAAACTTGGACAGTTGAATCTATCAAACAATCGCCTAACCGGGTCTCTACCAACCTCTATTGGAAACTTTCCCAACTTGCAAATTCTGCTGCTTCACGGAAATAGACTCTCAGGAGAAATTCCTCCAGATATAGGGAGGTTAAAAAATATCCTCAAGTTGGATTTAAGTGTCAACAACTTCTCAGGCACCATCCCTCCAGAGATAGGTAACTGTTTGTTGCTCACCTATTTAGATTTGAGCCAAAACCAACTATCAGGTCCTATCCCAGTTCAGCTTTCTCAAATTCACATAATGAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAATCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTGACTTCAGCAGATTTTTCTCACAATGACTTCTCTGGTTCAATACCCGAGGAGGGGCAATTTTCAGTGTTTAACTCTACATCCTTTATTGGGAATCCTCGACTCTGTGGATATGAAATGAATCCATGTAAACATTCTTCAAATTCAGTATTGGAGTCCCAAGACAGTAGCAGCACGAAGCCTGGTGTTCCTGGGAAGTATAAGCTTCTTTTTGCAGTGGCACTGTTGGCTTGTTCGTTAGCATTTGCAACCTTGGCCTTTATCAAGAGCAGGAAGCAAAGGAGGCACTCCAATTCATGGAAGCTCACAACATTTCAGAAACTGGAATATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGAGGAGGAGCTGGGGTTGTGTACCATGGAACCATGCCAAATGGAGAGCAAGTAGCTGTGAAGAAGCTGTTAGGAATCAACAAAGGATGTTCTCATGATAATGGTCTCTCTGCAGAAATAAGGACACTAGGCAGAATCAGGCACAGGTACATTGTGAGGTTGCTGGCCTTTTGCTCAAATAGAGAGACCAATTTGCTTGTTTATGAGTACATGCCAAATGGAAGCTTGGGAGAGGTTTTGCATGGGAAAAGGGGAGAGTTTCTCAAGTGGGATACCAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGACTTTGCTATTTGCACCATGATTGTTCCCCTCTGATAATCCACAGAGATGTGAAGTCAAACAACATACTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAGTGCATGTCATCCATTGCTGGTTCTTACGGTTACATAGCTCCAGAATATGCATACACGTTGAAAGTTGATGAGAAAAGTGATGTATACAGCTTTGGAGTGGTGTTGCTAGAACTACTAACTGGTAGAAAGCCAGTGGGGAATTTTGGGGAAGAAGGAGTAGACATTGTTCAGTGGACCAAGTTGCAAACAAATTGGAGCAAAGAGAAAGTGGTGAAGATTCTTGATGAAAGGCTATGTCACATTCCCTTAGATGAAGCAAAGCAGGAACAAAGCGTGGAGAGACCAACAATGAGGGAAGTGGTTGAAATGCTTGCACAAGCAAAGCAACCAAACACATTCCAAAAGCAGGGAAAGAGAACCAATGTTGATAATGTCATAGGAGTGAGTATGTACAATACATGGGGATTGGAGTTAGGGTCCTAG 2991 0.441 MGTSTLGLVLVPLLLCFASVSSLPMSLRRQASILVSLKQDFQANTDSLRSWDMTNSVSLCTWEGIECDQKNRSVVSLDITNLNLSGTLSPSITALRSLESVSLAGNGFSGGFPSDIHKLAGLRFLNISANKFSGDMNWEFSMLKELEVLDAYDNEFNCSLPLGVTQLPKLNTLNFGGNFFYGEIPPSYGDMVQLNFLSLAGNDLRGVIPSELGNLTNLTQLFLGYYNQFDGGIPPQFGKLVNLTHLDLASCGLTGPIPAELGNLNKLDTLFLQTNQLSGSIPPQLGNMSGMKCLDLSNNELTGDIPNEFSGLHQLTLLNLFINRLHGEIPPFIAELPNLEVLKLWQNNFTGAIPPRLGQNGKLVELDLSTNKLTGLVPKSLCLGRRLRILILLNNFLFGSLPADIGQCYTLQRVRLGQNYLTGSIPNGFLHLPELDLLELQNNYLSGWLPQETNTAPSKLGQLNLSNNRLTGSLPTSIGNFPNLQILLLHGNRLSGEIPPDIGRLKNILKLDLSVNNFSGTIPPEIGNCLLLTYLDLSQNQLSGPIPVQLSQIHIMNYLNVSWNHLNQNLPKELGAMKGLTSADFSHNDFSGSIPEEGQFSVFNSTSFIGNPRLCGYEMNPCKHSSNSVLESQDSSSTKPGVPGKYKLLFAVALLACSLAFATLAFIKSRKQRRHSNSWKLTTFQKLEYGSEDIIGCIKESNVIGRGGAGVVYHGTMPNGEQVAVKKLLGINKGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRKPVGNFGEEGVDIVQWTKLQTNWSKEKVVKILDERLCHIPLDEAKQEQSVERPTMREVVEMLAQAKQPNTFQKQGKRTNVDNVIGVSMYNTWGLELGS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00572 996 SUPERFAMILY Protein kinase-like (PK-like) 692 960 IPR011009 -
Vimu1g00572 996 Gene3D Phosphorylase Kinase; domain 1 666 775 - -
Vimu1g00572 996 Gene3D Ribonuclease Inhibitor 336 629 IPR032675 -
Vimu1g00572 996 ProSiteProfiles Protein kinase domain profile. 698 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00572 996 Gene3D Transferase(Phosphotransferase) domain 1 776 987 - -
Vimu1g00572 996 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vimu1g00572 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 667 775 - -
Vimu1g00572 996 FunFam leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X1 230 332 - -
Vimu1g00572 996 SMART serkin_6 698 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00572 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 340 626 - -
Vimu1g00572 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Vimu1g00572 996 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 197 - -
Vimu1g00572 996 Pfam Protein kinase domain 700 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00572 996 Gene3D Ribonuclease Inhibitor 229 331 IPR032675 -
Vimu1g00572 996 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515
Vimu1g00572 996 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515
Vimu1g00572 996 Gene3D Ribonuclease Inhibitor 140 228 IPR032675 -
Vimu1g00572 996 SUPERFAMILY L domain-like 41 377 - -
Vimu1g00572 996 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Vimu1g00572 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 29 139 - -
Vimu1g00572 996 SUPERFAMILY L domain-like 305 628 - -
Vimu1g00572 996 SMART LRR_typ_2 288 311 IPR003591 -
Vimu1g00572 996 SMART LRR_typ_2 481 505 IPR003591 -
Vimu1g00572 996 SMART LRR_typ_2 191 215 IPR003591 -
Vimu1g00572 996 SMART LRR_typ_2 336 360 IPR003591 -
Vimu1g00572 996 SMART LRR_typ_2 361 383 IPR003591 -
Vimu1g00572 996 SMART LRR_typ_2 240 264 IPR003591 -
Vimu1g00572 996 SMART LRR_typ_2 432 456 IPR003591 -
Vimu1g00572 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 140 227 - -
Vimu1g00572 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 776 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00572 Vimu-Chr1 3521839 3526192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00572 20 962 Receptor kinase-like Gene Family AT5G65700 57.083 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu1g00572 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00572 - - gmx:100816158 1786.16