LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g00571	ATGTTAACCACAATCCTTAGAAGAACTTCTTCCACCCTCTCAAGGCGCGCTTTGCTGGCCGTTGTAATCTCCGCCAGTAACGACTTCCGGCCACTCTCCCCGGCCTTCATTCCCAGAAACTTCCACTCCAAATCGGGTCCGTTGAATTTCCGTTCTTCTTTACATCACCGCGCGGAATATGCTGTAGACGATTTCCCTTACGAAGAAGGGTCTAAAGGGAACGCCGAGGAAGGACTCGAGATCGCGAAGCTCGGAATCTCTCAGGATATTGTCTCAGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCCGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGGACTGGAACTGGGAAGACTCTTGCATTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCGAAGCATGGGCGGGGGAGGGATCCTTTGGCTTTAGTTCTGGCTCCAACTAGGGAGCTTGCTAAGCAGGTTGAGAAGGAATTCTATGAGTCGGCACCTAACTTGGATACAATTTGTGTTTATGGTGGTACGCCAATCTCTAAGCAGATGAGGCAGCTCGATTATGGGGTTGATATTGCTGTGGGAACACCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATCTTAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTCGGCTTCCAGGAGGAAGTGGAGAGGATCTTGGAAAGGTTGCCCGCCAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCACGCAATTACCTGAATGATCCCCTGACCATTGATCTAGTTGGAGATTCTGATCAGAAGTTAGCAGATGGAATTTCGCTGTATTCCATTGCATCTGACTTATATGTTAAAGCGGGAATTCTTGCGCAGCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCAGACCGATTATCATATACCATGGCAAAAAGTGTTCAATGTGAGGCTTTGCACGGAGACATATCACAAGCTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTGGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCCAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAAATATTTGTTCATAGATCTGGACGGACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTGAGGCTTATTGAGCGTGATGTGGGAAGTAGATTTACAGAGCTACCAAGGATAGCTGTTGATAGTGCATCCATGGACACAGTTGGCATGGGTGGTGGGCGGTTTGGGTCTTTCGGAGGAACTAGGGATCGTCGTTACGGTGACACAGGTTTTGGCCGTGGTCCTGGATCTGGCCGTTCTGGTGGCTACAATAACAGTGGATTTGGCCGCCCCAGCTTTGGAGATTCTGGTGAAAGGTTTGGTGGACAGAATTATAATCGTTTTGGTGGCTCTAGTTCCAGTCAATCAGGAGGGGGGTTTTCTGGTGAAATGAGTAGATATGGTGGACCAAGCTCTGGTAGGTTTGGCTCATCTGGTGGCTTTGGGTCAGGTCAATCAGGAAGTAGATCTGGTCGATCATCCGGTGGGTCTAGGTTTAGTCGTCAAGATGATTTTGGGGGATTTGGTGGTTCAGATCGTTCGGGAGGTTTTGGAGAACTTGGCTCGGGTCAATCTAGTGGCTTTGGTGATTCTCGTGGTAGTAATCAGAACAATAGAAGACCTTTTTAA	1851	0.4652	MLTTILRRTSSTLSRRALLAVVISASNDFRPLSPAFIPRNFHSKSGPLNFRSSLHHRAEYAVDDFPYEEGSKGNAEEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYESAPNLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVVLDEADQMLQVGFQEEVERILERLPAKRQTLMFSATMPSWIKQISRNYLNDPLTIDLVGDSDQKLADGISLYSIASDLYVKAGILAQLITEHAKGGKCIVFTQTKRDADRLSYTMAKSVQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGSRFTELPRIAVDSASMDTVGMGGGRFGSFGGTRDRRYGDTGFGRGPGSGRSGGYNNSGFGRPSFGDSGERFGGQNYNRFGGSSSSQSGGGFSGEMSRYGGPSSGRFGSSGGFGSGQSGSRSGRSSGGSRFSRQDDFGGFGGSDRSGGFGELGSGQSSGFGDSRGSNQNNRRPF	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g00571	616	Gene3D	-	80	288	IPR027417	-
	Vimu1g00571	616	MobiDBLite	consensus disorder prediction	467	616	-	-
	Vimu1g00571	616	CDD	SF2_C_DEAD	310	427	-	-
	Vimu1g00571	616	FunFam	ATP-dependent RNA helicase RhlE	70	287	-	-
	Vimu1g00571	616	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	79	107	IPR014014	GO:0003724
	Vimu1g00571	616	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	69	456	-	-
	Vimu1g00571	616	MobiDBLite	consensus disorder prediction	592	616	-	-
	Vimu1g00571	616	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	313	457	IPR001650	-
	Vimu1g00571	616	MobiDBLite	consensus disorder prediction	519	535	-	-
	Vimu1g00571	616	Pfam	DEAD/DEAH box helicase	103	272	IPR011545	GO:0003676\|GO:0005524
	Vimu1g00571	616	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	153	439	IPR027417	-
	Vimu1g00571	616	Pfam	Helicase conserved C-terminal domain	312	418	IPR001650	-
	Vimu1g00571	616	SMART	ultradead3	98	301	IPR014001	-
	Vimu1g00571	616	CDD	DEADc	90	285	-	-
	Vimu1g00571	616	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	110	284	IPR014001	-
	Vimu1g00571	616	MobiDBLite	consensus disorder prediction	550	574	-	-
	Vimu1g00571	616	SMART	helicmild6	338	418	IPR001650	-
	Vimu1g00571	616	Gene3D	-	300	459	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g00571	Vimu-Chr1	3506316	3510128	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g00571	84	450	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.154	1.68e-66	221

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g00571	-		-	gmx:100786041	931.398