Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00548 ATGAAGCTTTCTTCTTCTGGATTTAATCCACCGGGGGAGGAAGAAGGTAGTGGTAGCTTCTTTAATTCTTTCGTTTTTGTGCAAATTGCTTTGTATGCTGTTCTGCGCTGTCCCCCACTTTTTGAGAATTTCTCTTGTCTTGACTCTGATTTTGAAGGGGAGAAAAAATGTTTGAATTCTGAGCTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCGCAACTTATCTGTCAGCTTCACAATGTAACAATGCATGCGGATGCTGAAACTGATGAAGTATATGCACAAATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTTATGCCTGCTGAATTGGGCACTCCCAGCAAGCAACCAACCAATTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTAGATTACTCACAGCAGCCTCCTGCTCAAGAGCTAATTGCCAGAGATCTTCATGATAATGAATGGAAGTTTAGACACATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACTGGTTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCGGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGAGCAAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCAGCAGCTCATGCTGCTGCTACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGTCCATCTGAATTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTATATCATACACGAGTTTCTGTTGGGATGCGGTTTAGGATGCTGTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCTGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGTCCTTGGCCAACGGGGCTACCTTCTTTGTATGGTCTCAAAGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGACTTGGGGACCAAGGAATGCAATCTTTAAATTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAAACTCGACTCTTCTATGCCAGGTCTTCAACCAGAGCTATACCAAGCAATGGCTTCTTCTGCATTCCAGGAAATGAGAGCAATGGATCCCTCAAAATCTTCCCAACCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAAGTACAGAGGCAAGTATTACCACAGTCTCAGCCTCAAAGCACCCTTCTACAAAATTTTCAAGAAAACCAAGTGCCTGCTCAGTCACAACTTCTGCAACAGCAGTTGCATCGCTACCATCCATATGGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAATTTGCCTCTTCAGCAGCAGTTACCAAATGTCATCTCTCCCTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTACGCATTGCCAGCAGCAGAGTTTTCCTGAACCTATCAGGAATCATATATCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGAACGTTCTCCCATGATGGAACATCCCAGTTACTTAACTTGAGTGGATCCAATTCCATTATATCTTCTGCATCCATCCTACCCAAGCAAATGACAGTTGAACCTCAGTTTCCCTCTGCTGCTGCTCAGTGTGTGTTGCCTCAGGTGGAAAACTTGGGAACATCGCAGTCAAATGTGTCTGAACTTGCTGCTTTGCCTCCCTTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATGGGCAGTGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTACCACAGGCACTGATTTTCCCCTAAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACCGACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCTTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATATTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATCCTATCTCCACTAGAAGTGCAGCAAATGGGCAAAGGTGTCAGTCCTTCTACCTCTGCCCCAGGTCACAAACTTTCTACCTCTGGCAACTCTTGTGATAATTATGCAAGTCAACAGGAGTTGAGAAGTTCCAGAAATGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2799 0.4509 MKLSSSGFNPPGEEEGSGSFFNSFVFVQIALYAVLRCPPLFENFSCLDSDFEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLMPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPKLDSSMPGLQPELYQAMASSAFQEMRAMDPSKSSQPLLQFQQTSNVPSAHTSEVQRQVLPQSQPQSTLLQNFQENQVPAQSQLLQQQLHRYHPYGDQRQQQQQLKNLPLQQQLPNVISPLSNFASGTQSQSPPMQALATHCQQQSFPEPIRNHISGSDVSPIQSLLGTFSHDGTSQLLNLSGSNSIISSASILPKQMTVEPQFPSAAAQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNMGSVNDSLSLPFSASNCGGTTGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGVSPSTSAPGHKLSTSGNSCDNYASQQELRSSRNGMASMGSFHY 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00548 932 MobiDBLite consensus disorder prediction 490 525 - -
Vimu1g00548 932 FunFam Auxin response factor 164 268 - -
Vimu1g00548 932 CDD B3_DNA 165 266 IPR003340 GO:0003677
Vimu1g00548 932 Gene3D - 164 267 IPR015300 -
Vimu1g00548 932 Gene3D - 330 402 - -
Vimu1g00548 932 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
Vimu1g00548 932 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 54 888 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu1g00548 932 SUPERFAMILY CAD & PB1 domains 789 872 - -
Vimu1g00548 932 MobiDBLite consensus disorder prediction 584 608 - -
Vimu1g00548 932 MobiDBLite consensus disorder prediction 887 919 - -
Vimu1g00548 932 Pfam AUX/IAA family 785 880 IPR033389 -
Vimu1g00548 932 FunFam Auxin response factor 330 402 - -
Vimu1g00548 932 Pfam Auxin response factor 292 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu1g00548 932 MobiDBLite consensus disorder prediction 491 525 - -
Vimu1g00548 932 SUPERFAMILY DNA-binding pseudobarrel domain 151 295 IPR015300 -
Vimu1g00548 932 SMART B3_2 166 268 IPR003340 GO:0003677
Vimu1g00548 932 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Vimu1g00548 932 ProSiteProfiles PB1 domain profile. 796 882 IPR000270 GO:0005515
Vimu1g00548 932 FunFam Auxin response factor 791 887 - -
Vimu1g00548 932 Gene3D - 792 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00548 Vimu-Chr1 3395404 3402878 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00548 135 887 B3 DNA Binding Superfamily AT5G37020 55.526 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu1g00548 AUX_IAA 1.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00548 - - gmx:100810798 1624.76