Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00541 ATGAAGAACACTATCCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCATGAACTTGTAGAACTCCTATGGCAAAATGGGCAAGTAGTGATGCACAGCCAAACAAATAGGAAGCTACCTGGGAATTCATCTAACTTGAGACAGCTGCAGAAAACTACTCAATCAAACAACTTGGATCAAGAAGAGGCAGCTCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAGTTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACAAGCAAATCAGAGAATTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTGGTGCCCGCCATAATCCTCCTTCACCTTCACAACCCCTACCATCTATCATGAAATCGTCCTGTGCTCAGGGACTCCAAGAGAATCTCATGTCTACTCCAGGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACCCCGTAATATTGTCTCTTCACCATCTCAAAAAACTGCAGTTAACCTCTCACAAAGTGAAGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACCGGGTTTCAAGCAGTGGAGTTTGGGCCACCACTAATAATGCTACTTTATCTGCTGAGCCAGAAGCTATAGATTGTATCCATAGACGATTTCCTAGAAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTGTGGCTTCATCTTCCGGTGGCTCAGGTAGTACTGGTATAGGAAGAACTCGTTCTCAATCAACAAGAGGACATGGCCAAAAGAGAAAAGTGACTGAAGAAGAAGCACTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGTTCCAGAAGAAACCGTGCAGCCGAAGTGCATAATCTATCAGAAAGGAGAAGAAGAGATAGGATTAACGACAAGATGAGAGCATTACAGCAACTGATACCAAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAGTTTCAGATTCAGGTAATGTGCATGGGAGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGTCACAGATGGGAATGGGAATTGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCAAAAGTGGGTCAAGCCATGTCTGTCACTCAGCCTCAGCCTCAGCCTCAGATGCCAAACCACAATTTACTATGCCAAAATCCAGTTCTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCAATGCCTTTCAGAACAGTATGCACGTTACATGGGCTACCATCTCATGAACAGTGCCTCTCAGCCAATGAACGCGTTGAGATATGGTTCCCAAGCAATGCAACACAGTGAAACAATGATTGCAGGAAGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTAGCTAATGTTAATGATGCTGTTAGTGGCAAAACTGGTAAGGCACTACATATATATACACCTAACTTTTTTGGATTTTTCATCAAGATTTAA 1674 0.4307 MKNTIPGWDFESDTCLTNQRKPTGLDHELVELLWQNGQVVMHSQTNRKLPGNSSNLRQLQKTTQSNNLDQEEAAPWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYKQIRELEEEKFANIFSPGARHNPPSPSQPLPSIMKSSCAQGLQENLMSTPGFHVPDSSQKINDFGASRKVLNFPHFSAPRNIVSSPSQKTAVNLSQSEAREHSVITVGSSHCGSNHIPQDQDVNRVSSSGVWATTNNATLSAEPEAIDCIHRRFPRSERGKSEMIEPTVASSSGGSGSTGIGRTRSQSTRGHGQKRKVTEEEALEEQSEATELKSADGNKLSQRSRRNRAAEVHNLSERRRRDRINDKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQIQVMCMGAGMTPVMFPGIQHYMSQMGMGIGGPSLPSIHNPMQLPKVGQAMSVTQPQPQPQMPNHNLLCQNPVLGAFNYQNQMQNQCLSEQYARYMGYHLMNSASQPMNALRYGSQAMQHSETMIAGSNNSSGPMSGTANVANVNDAVSGKTGKALHIYTPNFFGFFIKI 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00541 557 SMART finulus 342 391 IPR011598 GO:0046983
Vimu1g00541 557 Gene3D - 331 392 IPR036638 GO:0046983
Vimu1g00541 557 CDD bHLH_AtPIF_like 336 399 IPR047265 -
Vimu1g00541 557 Pfam Helix-loop-helix DNA-binding domain 340 386 IPR011598 GO:0046983
Vimu1g00541 557 MobiDBLite consensus disorder prediction 300 340 - -
Vimu1g00541 557 MobiDBLite consensus disorder prediction 262 340 - -
Vimu1g00541 557 MobiDBLite consensus disorder prediction 273 295 - -
Vimu1g00541 557 FunFam Basic helix-loop-helix transcription factor 331 394 - -
Vimu1g00541 557 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 398 IPR036638 GO:0046983
Vimu1g00541 557 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Vimu1g00541 557 PANTHER TRANSCRIPTION FACTOR PIF3 20 538 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00541 Vimu-Chr1 3345301 3348153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00541 7 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 31.346 1.10e-47 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g00541 HLH 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00541 K16189 - gmx:100811777 761.525