Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00535 ATGAAAAACTGTGAGAGAAGTGTTAGGCAGTACAACAAATCTGAACTTCCACGCCTTCGTTGGACACCTCAACTCCATCAACACTTCGTTCAAGCTATTCAAACCCTTGGTGGAAAACACAAGGCAACTCCGAAGAGAATTCTGCAGCAGATGCATGTGAGAGGACTCAGGATCGCTCACATCAAAAGCCATCTTCAGATGTACAGAAACATGAAAGGCTATGGGAAGAACTGTGGAGATGAGTTGATGGAAGGAAATGTAAAGGATTTCAAAGTATGCTCCATTTGTCCAACCCAAAGAATAATGAAGAGGGAACTTCATCTCTTAGACAACAAAAAAGGACTTTCACAAAGCAATGAAGAAACTGATTATGATCTAAACCAGGTATTTCCATCTTCCTGA 402 0.4104 MKNCERSVRQYNKSELPRLRWTPQLHQHFVQAIQTLGGKHKATPKRILQQMHVRGLRIAHIKSHLQMYRNMKGYGKNCGDELMEGNVKDFKVCSICPTQRIMKRELHLLDNKKGLSQSNEETDYDLNQVFPSS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00535 133 Pfam Myb-like DNA-binding domain 19 69 IPR001005 -
Vimu1g00535 133 Gene3D - 16 73 - -
Vimu1g00535 133 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Vimu1g00535 133 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 71 IPR006447 GO:0003677
Vimu1g00535 133 FunFam Two-component response regulator 12 73 - -
Vimu1g00535 133 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 102 IPR046955 GO:0003700
Vimu1g00535 133 SUPERFAMILY Homeodomain-like 17 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00535 Vimu-Chr1 3291498 3293915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00535 7 72 G2-like Transcription Factor Family AT2G42660 62.121 2.64e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu1g00535 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00535 - - pvu:PHAVU_008G196200g 228.794