Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00532 TTGGAACCTACTGTATTTGGGGTCATGGATAACTCAAATGATTCATCATCATCCTTGAGTTTTGTATCATCTCACCTCTCACATGGTTCTAGTAATCACAACGCGTCTTCCTCTACCAGCAATGAACACGTGGCAAATATTGAAATTTTGACTCTGAGTAAGCTCAGTGGAAGCCTTGAGAAGTTACTGATTGATGCTGAGTATGATTATAGTGATGCTGAGATTCTCGTTGAAGACATATGTGTGGGAGTTCATCGCTGTATATTGGCCTCGCGTAGTCCTTTTTTTCATGAGCTTTTTAAAAAAGGAACGGGTGGATCAGGGAAGGAAGGAAAACCAAGGTATCTCATGTCAGAATTGGTGCCTTATGGCACAGTTGGATATGAAGCTTTCCAAGTTTTCTTGTACTATCTGTACACTGGAAAGCTAAAAGCTTCACCAACAGAAGTGACAACATGTGTTGATGAAACATGTATCCATGATGCATGTCGCCCTGCTATCAATTATGCATTGGAGCTGATGTATGCTTCTGCCAATTTTCAGATGAAAGAGCTGGTTTTACTTTTTCAGCGGCATCTGCTAAACTTTGTTGAGAAGGCTCTTGTGGAAGATGTGATTCCTATTCTTGTGGCTGCTTTCAACTGCCAAATAGACCAGCTTCTCTCTCGGTGCATTCACAGAGTTGCAAGGTCTGACTTTGACATCATATCTTTGGAAAAGGAGCTCCCTCATGAAGTTGTGACTGAAATCAAATCGTGCCGTCTCTCATCTCAGCCAGAATCCGCAGCTGATACAATGGAAGTGGAGCCTTTGAGTGAAAAGAGTATCAGGAGAATCCATAAATCATTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTCTAAATGAGTCTAAGGTCACTCTAGATGATGCATATGCCCTGCACTATGCCTGTGCCTACAGTGATTCTAAGGTTATTCAAGAAGTTCTTGGTCTTGGTATGGCTGATATTCTTCGGAGAAATTCCCGAGGATACACGGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTGGCACTGCTGAATAAAGGGGCATGTGCAACAGATACTACTCCAGATGGTCAAACTGCTCTTTCAATTTGTCAGAGGTTGACAAGACGCAAGGATTATCATGAGAAAACAGTGCAGGGTAAGAAATCTAACAAGGACAGACTCTGTGTTGATCTCCTGGAGAGGGAGATGAGAAGAAGTTCTATGACTGTGAGTATGTCTGTATCATCACAGTTAACAGCTGATGATTTGCACATGAGACTAGATTACCTTGAAGATAGAGTTTTATTTGCTCAGTTGTTGTTTCCTGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCTTCATCACTGTATGCAAACGAATCAGCATTGAAGGGCACAAATGGAAATCTAAAAGAAGTTGATCTAAATGAATCTCCCTCTGCTCGAGCCAGAAAACTTCAGTTAAGACTGCATGCCCTTATGAAAACAGAAGTGCTTGATGAGTTTCTGGAAGAGGATATGCCAGATGTGTTCTTCCTAGAGAAGGGCAGTGAAGAAGAGCAGAGAATGAAGAAAGCACGGTTCATGGAACTTAAAGAAGATGTGCAGAAAGCATTTCACAAAGATATGGCTGAAAATAACCATTCAGGTTTTTCATCTTCAGTGTCCTCTTCATCATCTTCAACTCGGAGGGAAGGTCTTAACCACAGAGTGAGGAGAAAATGA 1758 0.4209 MEPTVFGVMDNSNDSSSSLSFVSSHLSHGSSNHNASSSTSNEHVANIEILTLSKLSGSLEKLLIDAEYDYSDAEILVEDICVGVHRCILASRSPFFHELFKKGTGGSGKEGKPRYLMSELVPYGTVGYEAFQVFLYYLYTGKLKASPTEVTTCVDETCIHDACRPAINYALELMYASANFQMKELVLLFQRHLLNFVEKALVEDVIPILVAAFNCQIDQLLSRCIHRVARSDFDIISLEKELPHEVVTEIKSCRLSSQPESAADTMEVEPLSEKSIRRIHKSLDSDDVELLKLLLNESKVTLDDAYALHYACAYSDSKVIQEVLGLGMADILRRNSRGYTVLHVAARRKDPSILVALLNKGACATDTTPDGQTALSICQRLTRRKDYHEKTVQGKKSNKDRLCVDLLEREMRRSSMTVSMSVSSQLTADDLHMRLDYLEDRVLFAQLLFPAEARVAIENAEADSSSLYANESALKGTNGNLKEVDLNESPSARARKLQLRLHALMKTEVLDEFLEEDMPDVFFLEKGSEEEQRMKKARFMELKEDVQKAFHKDMAENNHSGFSSSVSSSSSSTRREGLNHRVRRK 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00532 585 MobiDBLite consensus disorder prediction 550 585 - -
Vimu1g00532 585 Pfam Ankyrin repeats (3 copies) 286 365 IPR002110 GO:0005515
Vimu1g00532 585 ProSiteProfiles BTB domain profile. 71 147 IPR000210 GO:0005515
Vimu1g00532 585 ProSiteProfiles Ankyrin repeat region circular profile. 337 362 - -
Vimu1g00532 585 SMART BTB_4 71 197 IPR000210 GO:0005515
Vimu1g00532 585 Gene3D Potassium Channel Kv1.1; Chain A 35 229 IPR011333 -
Vimu1g00532 585 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 244 401 - -
Vimu1g00532 585 Pfam BTB/POZ domain 68 151 IPR000210 GO:0005515
Vimu1g00532 585 ProSiteProfiles Ankyrin repeat profile. 337 362 IPR002110 GO:0005515
Vimu1g00532 585 MobiDBLite consensus disorder prediction 557 575 - -
Vimu1g00532 585 Pfam NPR1/NIM1 like defence protein C terminal 379 569 IPR021094 -
Vimu1g00532 585 SMART ANK_2a 303 333 IPR002110 GO:0005515
Vimu1g00532 585 SMART ANK_2a 337 366 IPR002110 GO:0005515
Vimu1g00532 585 PANTHER REGULATORY PROTEIN NPR3 30 576 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vimu1g00532 585 Pfam Domain of unknown function (DUF3420) 232 280 IPR024228 -
Vimu1g00532 585 SUPERFAMILY POZ domain 68 195 IPR011333 -
Vimu1g00532 585 SUPERFAMILY Ankyrin repeat 275 380 IPR036770 -
Vimu1g00532 585 CDD BTB_POZ_NPR_plant 54 197 - -
Vimu1g00532 585 Gene3D - 271 411 IPR036770 -
Vimu1g00532 585 FunFam Regulatory protein NPR3 45 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00532 Vimu-Chr1 3266580 3270079 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu1g00532 NPR1_like_C 3e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00532 K14508 - gmx:100814739 916.376