Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00528 ATGGCGTTGAGCATCAATTTCCTAGCGCCTGGGCCGGTGGCTTTCCAACGCTTGGGCATTGACTCTCTGTTTCAAGCCGTAGAGCGCCAGTTTCTAGGCGCCTGGGCGCCAACCTGTAGGAGGAGGAGCTTCCACGAAGCTTTGTTCACTGATACTGAAAAACGTGTATTTAATCAGAGCACAGTGAACATCCTTAGTTGTAGTTTGGTTTTTTGCAGCATGGGAAAACGTGGTGAGGAAGAAGAGTGTGTTGGTTTCAGCTACGATGTGTTCATTAGCTTTAGAGGGGAAGATACTGGGAACAATTTTGTAGGGCATCTCCGTAAAGAGTTGGGTAGGAAGGGAATGGTGAGTTTGAACGATGAGAGTGATATGAGGACAGAGGAAGGTCTTTCAGCTGCTGTGTGTGAGGCCATTGAAGAATCTAATATTTTCATAGTTGTGTTTTCTGAGAACTATGCATCTTCCACATGGTGTCTCGATGAACTTGTTAAGATTATCCAACGCACCCACATCAACAGTAAGCAAGTTGTTTACCCAGTGTTCTACCATGTAGATCCCTCAGATATACGGAAAATGAGAAACAGTTTCGGAAAACACATGAGGGCACACGAAAATGAGATTGGAAAAGAGTCGCAGAGAATGCAGGCTTGGAGGTCTGCTTTGTCTGAAGCAGTTAACTTGCCGGGGATGCATGTTACCACCGGCATAGCTCCTAAGCCTTTATCTACCGGTGAAAATCTTGTTGGACTGGAGCCCCACATAGAAGAGGTTATGTCACTTTTGGATATGAATAATGACAAAACTGTAAGGATGTTGGGCATATATGGGCTTGGTGGAATTGGAAAAACGGAACTTGCCAAAGCTTTGTATGACAAAGTTGTGCAAAACTTTGATGCTGCAAGTTTTCTTGCCGGTGTTAGAGAGAAATCAAACACAATCAATGGCATGGAAGAACTGCAAAAGACACTTTTATCTGAGATGTTAGAGGAGTCGGAAACTATGTTGGGAAGTACCAATAAAGGAATTTATGAAATAAAACGAAAGCTTCGCCGAAAGAAAGTTCTTTTGGTTCTTGACGACGTTGACGATAAAGAGGAGTTAGAAAATTTGGCAGGAGGGTGTGATTGGTTTGGTCCAGGTAGTAGGATTATTATAACGACAAGGGAAAAAGATGTCCTAATTGCTCACCATGTTGGAAATATTTATGAAATGAAGGAACTTGATGAACAACATTCTTTGGAACTCTTTTGTTGGAATGCCTTCGGACAAGGTTGTCCTAAAACAGGTTTTCAAGATGTGTCCGTGCGTGCTGTAGATTACGCCAAAGGTCTTCCACTGGCTTTAAAAGTGATAGGCTCTGACTTAGCCACTCTTGATGAAGAAAGTTTAGATGCCTGGGAAGATGCATTGGAAGAATATGAGAAGACTCCTTCAAAGAAAGAGATTGAAGATGTGCTTAAAATAAGCTACGATAGATTGGATGATGATGCCAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGGGAGAGAATGAAATATGTGAAAAAGATACTTAAGGAATTTTGTTCAACATCCAACATGAAAGTACTTGTCAATAAATCACTCATAACTATCGAGAATGACAGGCTGAAGATGCATGATCTAATACAAGATATGGGTAGACAGATTATTAGGCAGGAAGCACCAGATAATCCTGGACAACGTAGCAGAATATGGGATTATGAAGATGTTATTGAAATACTAAACGAAGATTCAGGAAGTGATAAGATTCAAGGGATTAAGCTTGATCCTCCTAAGCAAGCAGAAGTAAAATGGAGTGGAACTGCGTTTGGGAAAATGAAATGGCTCAGAATTCTCATTGTTCGAAACACATCCTTTTCATCTGAACTTCAACATTTACCAAATCATTTAAGACTACTTCACTGGGACAACTATCCTTCAAAGTCTTTCCCCCAAAAATTCCATCCAAGGAAAATCGTTGTTTTCAATTTGCCTAGAAGTTCTCTAACATTCCAAGAGCCATTCAAGAAATTTCCATGCTTGAGTAATATGGACTTTTCATATAACCAACGTATCATTGAAATACCTGATGTGTCCGAACTTCAGAATCTAAGAGAACTGAGACTTGATCATTGTAGAAACCTAATTGCAGTCCATCAATCTGTTGGATTTTTGAAAAGGCTTTCTCATTTAAGTGTTTCAGAATGCACAAAACTTCAAAACTTCCTCTCCAGAATGTTTCTACCATCTTTAGAAGTCTTTGATCTTAATCTATGTGAAAGCGTTGGTCACTTCCCAGAGATAATGCAAGAAATGACAAAGCCATTGAAGATTTATGTGATAAATACGGGTATTCAAGAGCTTCCAGAATCCATCAGTAAACTTATTGGGCTTGTTTTTATAGACATATCCAATAACAGACAACTTAAATATCTGCCAAGCAGCTTATTCATGTTGCCAAATGTTGATTCCTTCAAAATCGAAGCATGTTCGAAACTTGGACAATCCTTCAGAAGTTTGGTGCAACACCCTTCAAAAGTCAATGTTCGCCCGAAATTACGATCACTGAATTTTCAAAAGGGTAACTTGTCTGATGAAGATCTTCTTGCGATTCTTTGCTACTTTCCGAAATTGGAAGAATTGATTGTTTCAGAGAACAATTTTGTATATATCCCTTCATGCATCAAGGAATGTGGTGACTTGACAAGTCTCGATTTGAATGGATGTAAGAAGCTTAAAAAAATTCCAGAACTCACTAGCTTGAGAATTCTTGATGTTCATCATTGTTTCTATCTGGAAGAAATCTCAGAGTTGCCGTCTACTGTTCAGAAAGTAGATGCAAGATTTTGTTTCAAGTTAACAAAAGAGACATCAGACATGCTATGGTGTCAGGTGAAGAAAAGGGTTGGTGGAATTGAAATGGTGATGCCGTTTATAACTGAGATTCCAGAATGGTTTAACTTTGTGGGGGTGGGAAGGATTCCTAGTTTATGGATTCGTGGCAAGTTCCCTAACATAGTTCTAGCCATGATCTTCCACTTCCAAAATGAGAGTGAAAGGAACAAATTCGTTCGGCGTCGCCTTGTTGATCTTCGTTTACTTATCAACGGTCGAAATGCTCCTGGCAAAGGGTACCGGGACTTCGAAATTGAAGCAGAACACATCTTGATCTGTGATCTACGAGTTTTGTTCAGTGAGAAGGAGTGGTTTGGGCTTGATGCATTGGTGGAGAATGAGTGGAATCCGGTGCAGGTTGAGTATGAAGCCAGTTCGTCGTTGATGATAAGTGGTTGGGGAGCGTTTGTGTATGATGAAGGAAGCAACATGAAAGATGTCGCATTCACTTGTCCGAATCCCATGACTTCAGACAAGATACCACAGACAATAATTCCTGAGAAAGATCCTATGGAGAAGTATAAAAAGAGGATACGGGAGCTACGTCTGGACGAAATATTTAAGAAGACGTTGACGGAATGGCAGGAGAACAAAGAAAGAGGAGGGGACAGGAGTCATGACGATTGCATCCGAATGGCATTGGGACAAATAAAGAAGATATCAGAGGATGCTGAGGATGCATTGAATTCAAAAGGGTCAGCTTTAGAAGATCCAAACTCCTACCTGAGGTGGCTGCTAGATACGTTAGAAAATGATGATGGAAAGCCTAAAGAGATTATCAAAGGTGATCTGGCGTTGGTAGTACAAAAGCATTCAGCGACAGGGAAGAAGAAGGATAATGTAGGAGAAGCTTCATGCTCTGGGCATCAGGGAAGAAAGGAGGAGGAAGAAGGGTACGATCCTGTGGTGGAAGCCCCAAGTATCCCTTTTTATACTTCAGTAGTCAGAGAGCAAAGAGTAAACGATTCTATGGAGGCAGATCTGCCGGAGGACATAGTGATGGAATTATTGTGTGAAGGAATGAGGGATGGACTTGTTGAGGCACAGAATGAATTTCCTTCTCTTGATATTGCTGAAACCAGTAACGCTGTGTTGGAGAAGGGTTATAAGGTTAGATGGGCACCTGAAGTAGAAGAGAAAATATCGGTTGAAAGTAGGATATACATGTCTGGAATTTACTCTGGACTCAAAGAAGCAAAGCTGAGGTTTCTTGATTTGGACATGTGGGCAACAATAAATACTGTGGCAAAAAGGAAAGGGATCGAAGGAATTTTTGTACCACCCTCTCAAGCAAACCTGGAGTTTCCATATTTGGATTGGAGTACAGTGAAAGTTCCTCCTTCTGAGGACCCTCTGATGCAAATATTCATGAAGATGAAACAACAAAGTAATTTTGAAGGCGAGGTGATGAGTAAACTGTTCTGGAAGTTGAAGGGGGAACACGAAGTTCTGCGCAATAAATTTGCAGAACTTGATGATGGAAATGAAAATGAATATGATGAGTGTGTTGAGAAGAGAGAAGAGAAGCATGATGGTGTGGGAAAATATGAAGAGATTAGTGGTGTTTTGAGAGGAAGAGGTGAAGAAATAGAGAGGCTGTACGAAGCTGGGGTTGAAGGATTGAAGAGATCAGAAGAGTTTGAAGATGTGATGGGTGCAATATACTTGAATGGACTTAGGGCAGGACTCCTTGAAGCACATGCTCTCTTACTTAATCTCCTTACTCCACACAGAAACTGA 4644 0.4074 MALSINFLAPGPVAFQRLGIDSLFQAVERQFLGAWAPTCRRRSFHEALFTDTEKRVFNQSTVNILSCSLVFCSMGKRGEEEECVGFSYDVFISFRGEDTGNNFVGHLRKELGRKGMVSLNDESDMRTEEGLSAAVCEAIEESNIFIVVFSENYASSTWCLDELVKIIQRTHINSKQVVYPVFYHVDPSDIRKMRNSFGKHMRAHENEIGKESQRMQAWRSALSEAVNLPGMHVTTGIAPKPLSTGENLVGLEPHIEEVMSLLDMNNDKTVRMLGIYGLGGIGKTELAKALYDKVVQNFDAASFLAGVREKSNTINGMEELQKTLLSEMLEESETMLGSTNKGIYEIKRKLRRKKVLLVLDDVDDKEELENLAGGCDWFGPGSRIIITTREKDVLIAHHVGNIYEMKELDEQHSLELFCWNAFGQGCPKTGFQDVSVRAVDYAKGLPLALKVIGSDLATLDEESLDAWEDALEEYEKTPSKKEIEDVLKISYDRLDDDAKQVFLDIACFFKGERMKYVKKILKEFCSTSNMKVLVNKSLITIENDRLKMHDLIQDMGRQIIRQEAPDNPGQRSRIWDYEDVIEILNEDSGSDKIQGIKLDPPKQAEVKWSGTAFGKMKWLRILIVRNTSFSSELQHLPNHLRLLHWDNYPSKSFPQKFHPRKIVVFNLPRSSLTFQEPFKKFPCLSNMDFSYNQRIIEIPDVSELQNLRELRLDHCRNLIAVHQSVGFLKRLSHLSVSECTKLQNFLSRMFLPSLEVFDLNLCESVGHFPEIMQEMTKPLKIYVINTGIQELPESISKLIGLVFIDISNNRQLKYLPSSLFMLPNVDSFKIEACSKLGQSFRSLVQHPSKVNVRPKLRSLNFQKGNLSDEDLLAILCYFPKLEELIVSENNFVYIPSCIKECGDLTSLDLNGCKKLKKIPELTSLRILDVHHCFYLEEISELPSTVQKVDARFCFKLTKETSDMLWCQVKKRVGGIEMVMPFITEIPEWFNFVGVGRIPSLWIRGKFPNIVLAMIFHFQNESERNKFVRRRLVDLRLLINGRNAPGKGYRDFEIEAEHILICDLRVLFSEKEWFGLDALVENEWNPVQVEYEASSSLMISGWGAFVYDEGSNMKDVAFTCPNPMTSDKIPQTIIPEKDPMEKYKKRIRELRLDEIFKKTLTEWQENKERGGDRSHDDCIRMALGQIKKISEDAEDALNSKGSALEDPNSYLRWLLDTLENDDGKPKEIIKGDLALVVQKHSATGKKKDNVGEASCSGHQGRKEEEEGYDPVVEAPSIPFYTSVVREQRVNDSMEADLPEDIVMELLCEGMRDGLVEAQNEFPSLDIAETSNAVLEKGYKVRWAPEVEEKISVESRIYMSGIYSGLKEAKLRFLDLDMWATINTVAKRKGIEGIFVPPSQANLEFPYLDWSTVKVPPSEDPLMQIFMKMKQQSNFEGEVMSKLFWKLKGEHEVLRNKFAELDDGNENEYDECVEKREEKHDGVGKYEEISGVLRGRGEEIERLYEAGVEGLKRSEEFEDVMGAIYLNGLRAGLLEAHALLLNLLTPHRN 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00528 1547 Gene3D - 85 237 IPR035897 -
Vimu1g00528 1547 ProSiteProfiles TIR domain profile. 86 226 IPR000157 GO:0007165
Vimu1g00528 1547 Pfam TIR domain 88 224 IPR000157 GO:0007165
Vimu1g00528 1547 Pfam NB-ARC domain 252 492 IPR002182 GO:0043531
Vimu1g00528 1547 SUPERFAMILY Toll/Interleukin receptor TIR domain 82 230 IPR035897 -
Vimu1g00528 1547 SUPERFAMILY L domain-like 547 940 - -
Vimu1g00528 1547 SMART till_3 87 228 IPR000157 GO:0007165
Vimu1g00528 1547 Gene3D - 238 400 IPR027417 -
Vimu1g00528 1547 Gene3D Ribonuclease Inhibitor 782 964 IPR032675 -
Vimu1g00528 1547 Gene3D Ribonuclease Inhibitor 607 781 IPR032675 -
Vimu1g00528 1547 Coils Coil 457 477 - -
Vimu1g00528 1547 MobiDBLite consensus disorder prediction 1245 1268 - -
Vimu1g00528 1547 PRINTS Disease resistance protein signature 702 718 - -
Vimu1g00528 1547 PRINTS Disease resistance protein signature 442 456 - -
Vimu1g00528 1547 PRINTS Disease resistance protein signature 349 363 - -
Vimu1g00528 1547 PRINTS Disease resistance protein signature 272 287 - -
Vimu1g00528 1547 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 88 826 IPR044974 GO:0006952
Vimu1g00528 1547 Gene3D - 407 495 IPR042197 -
Vimu1g00528 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00528 Vimu-Chr1 3239282 3246978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00528 88 885 WRKY Transcription Factor Family AT4G12020 30.096 9.39e-97 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00528 - - vun:114193909 2400.55