Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00527 ATGGGGTGTGTCGGTTTCAGCTACGATGTGTTCATCAGTTTTAGAGGCGAAGATACTAGGGACAATTTTGTAGGACATCTCCGTAAAGAGTTGGGTAGGAGGGGAATACTCACTTTCCATGATGACAGGGATATGGGGATAGGGGAAAGTCTTTCACCTGCTCTCAACAACGCCATGGAAGAATCTAGGATTTTCATAGTTGTGTTTTCTGAGAACTATGCATCTTCCACATGGTGTCTGGATGAACTTGTTAGGATCATGGAGCTCTCCAAGATGAGGGAGAAGAAGCAAGTTGTTTTCCCAGTGTTCTACCATGTACATCCATCAGATATACTGCAAGACAGAAATAGCTTCGGAAAACACATGAGGGCACATGAAAATACGTTTGGAAAACAGTCCCAGAGAATGCAGGCTTGGAGGTCTGCTTTGTCTCAAGCAGTTCACTTGCCAAGGAAGCATATTACCACTGGGTGTGAAAACAATTTTATTGAAGAAATTGTTGGGGAGGTGTATAAGAATATAGCTCCTAAACCTTTATACATTGGTCAGAAGCCTCTCGGACTTGAGCCCCACATAGAAGAGGTTATGTCACTTTTGGACATGAAGCCTGATGACAAAACTGTAAGGATGTTGGGCATATATGGACTTGGTGGAATTGGAAAAACGGAACTTGCCAAAGCTTTGTATGACAAAATTGTGCAACACTTTGATGCTGCAAGTTTTCTTGCCGGTGTTAGAGAAAAATCAAACACAATAAATGGCATGGAAGATCTACAGAAGACACTTTTATCTGAGATGTTTGAGGAGTCCGAAACTAAGTTGGGAAGTACCAATAAAGGAATTTATGAAATAAAACGAAAGCTTTGCCGAAAGAAAGTTCTTTTGGTTCTTGACGACATTGATGATAAAGAAGAGTTAGAAAAGTTGGCTGGAGGTTGTGATTGGTTTGGTCCAGGTAGTAGGATCATTATAACGACAAGGGAAAAAGATGTCCTAATTGCTCACCATGTTGGAAATATTTATGAAATGAAGGAACTTGATGAACAACATTCTTTAGAGCTCTTTTGTTGGAATGCCTTCCGACAAGGTTGTCCTAAAACAGGTTTTCAAGATGTGTCTGTGCGTGCTGTAGATTACGCCAAAGGTCTTCCACTGGCTTTAAAAGTGATAGGCTCTGACTTAGCTACTCTTCATGAAGAAAGTTTAGATTCCTGGGAAGATGCATTAGAAGAATATGAGAAGACTCCTCCTAATAAAAAGATTCAAGATGTGCTTAAAATAAGCTACGATAGATTGGATGATGATGCCAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGTGAGAGAATGGAATATGTGAGCAAGATACTTGACGAATCTGGTTCGGCATCCAAAATCAAAGTACTTGTTAATAAATCTCTCATAACTGTCGATAAAGGCTGCCTCAAGATGCATGATCTAATACAAGATATGGGTAGACAGATTGTTAGGCAGGAAGCACCAAATCCTGGTGAACGTAGCAGAATATGGGATTATGAAGATGTTATTGAAATACTAAACGAAGATTGTGGAAGTGATAAGATTCAAGGGATTATGCTTGATCCTCCTCAGCAAGAAAAGGTAAAATGGAGTGGTACTGAGTTTGAGAAAATGAAATGCCTCAGAATTCTCATTGTTCGAAACACATCCTTTTCATCTGAACCTCAACATTTACCAAATAATTTAAGACTGCTTGACTGGGACAACTATCCTTCAAAGTCTTTCCCACCAAAATTTCATCCAAAGAAAATTGTTGTCTTCAATTTACCTAGAAGTTGTCTAACATTGGAAGAGCCATTCAAGAAATTTCCATGCTTGACTAATATGGACCTTTCATATAACCAACGTATCATTGAAATACCTGATGTGTCCGAACTTCAGAATCTAAGAGAATTGAGACTTGATCATTGTGGAAACCTAATTGCAGTCCATGAAACTGTTGGATTTTTGAAAAGGCTTTCTCATTTAAGTGTTTCAGAATGCAAAAAACTTCAAATTTTCATATCCAGAATGTTTCTACCATCTCTACAAATCTTTAATCTTAACTTTTGTGAAAGCCTTGGTCACTTCCCAGAGATAATGAAAGAAATGACAAAGCCATTGAAGATTCATATGATAAATACTGCTATTCAAGAGCTTCCAGAATCCATTAGTAAACTTACTGGGCTTGTTTCCTTAGACATATCGAATAACAGGGAACTTAAATATCTACCGAGGAGCTTATTCATGTTGCCAAATGTTGATTCTTTCATAGTCAAAGCATGTTCCAAACTTGGAGAATCCATCAGAAGCTTGGTGCAACACCCTTCAAAACCCAATGTTCATAAAAAATTACGATTACTGAATTTCGAAAATGGTAACTTGTCTGATGAAGATCTTCTTGCAATTATTTGTTACTTTCCAAAATTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATCTATCCCTTCATGCATCAAGGAATGTGGTGACTTGACAAGTCTCGATTTGAATGGATGTAAGAAGCTTAAAAAAATTCCTGAACTCACTAGCTTGAGAATTCTTGATGTTCATCATTGTTTAGACCTTGAAGAAATTTCAGAGTTGCCGTCTACTGTTCAGAAAGTAGATGCAAGATTTTGTTTCAAGTTAACAAAAGAGACATCAGACATGTTATGGAATCAGGTGAAGAAAGGGGTAGGAGGAATAGAAATGGTGATGCCATTTTTAACTGAGATTCCAGAATGGTTTAACTTTGTGGGGGTGGGAAGGATTCCTCGTTTCTGGGTTCGTGGCAAGTTCCCCAAGATGGTTGTAGCGATGATCTTCCACTTCGAAAAGGAGAGTCAAAGGGACAAATTTGATGGTCGTGGGCTTGTTGATCTGCGTTTACTAATCAACGGGCGATATGCTCCTCGAAAAGGGTATCGGAACTTTAGAATTGAGGCAGAGCACATGTTGTTGTGTGATGTAGGAGTTTTGTGCAGTGAGAAGGAGTGGGTTGGCAATGCAGTTATGGAGCATGAGTGGAATCTGGTGGAGGTTTCGTATGATGCGACGTCGTCGTTGATGATAAGTGGTTGGGGAGCGTTTGTGTTTGAAGAAGGAACGAATATGGAAGATCTCCTGTTCGCCAGTCCCAATAACTTGATTGTGAACGGAGATTCAACCTCTGTCCATAAGGGAAGTTTGGAGGACGACGAAGACTACGTTCCTCTTCCGGAAGGAATAGCATGGGAATTCTTGTTTGAAGGAATAAAAGATGGAATTGTTGAGGCATGGAATAAATTTCCTTCTATGGATGTTGCTGAAATCTCTGTGGCTGCCTTGAAGAAGAATTGTAAGATTGAATGGACGGTTGAAGGGATGGAGGGAATACCTTCAGCTGAAAATAGGACGTACATGACTGGACTTTACGGTGTACTCTTGGAAGCAAAACTCAGATTTCCTGATTTGGACGTTGGGGCAGCACTAACTACTGTGGCAAATAGGAAAGGGATTAAAGGAACTTTTAAATCACCCTTACAACAAAATCTGAGGATTCCTCGATTGGATTGGAGTACAGTGAGACTTCCTCCCTCTCACGACCCTCTGATGCAAATATTCATGATGATGATGAAGCAGCAAAGTACTTCGGAATCCGAGCTCAAAACTAAAACCTTCTGGAAGTTGAAGGAGAGCCACCTAATTCTCCGCAACAGATTGTCACATAAGACTGCTGCTCAGAACTCAGCCAGCTCTTGGAAAAATCAATATGACGAACTGATTCAGAAATTCAACATGCAATATGATGCGTTTGTTGGGAAGAGAGTAGACAACCTTTATGGTGTGGCAAAGTATGAGAGGGATAGTGGTGTTTTGAAAGAAAGAGCTGAAGAAATAGAGAGGGAATTGGATGCTGTGGTTGGGAGGCTCCAAAAATCAGAAGAGTTTGGAGATGTAATGACTGCAATGTTATTGAATGGAGTCAGGGATGGAATCCTTGAAGCAAGGGCCATCTTACTTGCTCTCCGCACCAACACACAAACAGATTGA 4062 0.3978 MGCVGFSYDVFISFRGEDTRDNFVGHLRKELGRRGILTFHDDRDMGIGESLSPALNNAMEESRIFIVVFSENYASSTWCLDELVRIMELSKMREKKQVVFPVFYHVHPSDILQDRNSFGKHMRAHENTFGKQSQRMQAWRSALSQAVHLPRKHITTGCENNFIEEIVGEVYKNIAPKPLYIGQKPLGLEPHIEEVMSLLDMKPDDKTVRMLGIYGLGGIGKTELAKALYDKIVQHFDAASFLAGVREKSNTINGMEDLQKTLLSEMFEESETKLGSTNKGIYEIKRKLCRKKVLLVLDDIDDKEELEKLAGGCDWFGPGSRIIITTREKDVLIAHHVGNIYEMKELDEQHSLELFCWNAFRQGCPKTGFQDVSVRAVDYAKGLPLALKVIGSDLATLHEESLDSWEDALEEYEKTPPNKKIQDVLKISYDRLDDDAKQVFLDIACFFKGERMEYVSKILDESGSASKIKVLVNKSLITVDKGCLKMHDLIQDMGRQIVRQEAPNPGERSRIWDYEDVIEILNEDCGSDKIQGIMLDPPQQEKVKWSGTEFEKMKCLRILIVRNTSFSSEPQHLPNNLRLLDWDNYPSKSFPPKFHPKKIVVFNLPRSCLTLEEPFKKFPCLTNMDLSYNQRIIEIPDVSELQNLRELRLDHCGNLIAVHETVGFLKRLSHLSVSECKKLQIFISRMFLPSLQIFNLNFCESLGHFPEIMKEMTKPLKIHMINTAIQELPESISKLTGLVSLDISNNRELKYLPRSLFMLPNVDSFIVKACSKLGESIRSLVQHPSKPNVHKKLRLLNFENGNLSDEDLLAIICYFPKLEELIVSENNFVSIPSCIKECGDLTSLDLNGCKKLKKIPELTSLRILDVHHCLDLEEISELPSTVQKVDARFCFKLTKETSDMLWNQVKKGVGGIEMVMPFLTEIPEWFNFVGVGRIPRFWVRGKFPKMVVAMIFHFEKESQRDKFDGRGLVDLRLLINGRYAPRKGYRNFRIEAEHMLLCDVGVLCSEKEWVGNAVMEHEWNLVEVSYDATSSLMISGWGAFVFEEGTNMEDLLFASPNNLIVNGDSTSVHKGSLEDDEDYVPLPEGIAWEFLFEGIKDGIVEAWNKFPSMDVAEISVAALKKNCKIEWTVEGMEGIPSAENRTYMTGLYGVLLEAKLRFPDLDVGAALTTVANRKGIKGTFKSPLQQNLRIPRLDWSTVRLPPSHDPLMQIFMMMMKQQSTSESELKTKTFWKLKESHLILRNRLSHKTAAQNSASSWKNQYDELIQKFNMQYDAFVGKRVDNLYGVAKYERDSGVLKERAEEIERELDAVVGRLQKSEEFGDVMTAMLLNGVRDGILEARAILLALRTNTQTD 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00527 1353 SUPERFAMILY L domain-like 485 877 - -
Vimu1g00527 1353 Pfam NB-ARC domain 189 429 IPR002182 GO:0043531
Vimu1g00527 1353 ProSiteProfiles TIR domain profile. 6 147 IPR000157 GO:0007165
Vimu1g00527 1353 Coils Coil 395 415 - -
Vimu1g00527 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 443 IPR027417 -
Vimu1g00527 1353 Pfam TIR domain 8 173 IPR000157 GO:0007165
Vimu1g00527 1353 Gene3D - 176 338 IPR027417 -
Vimu1g00527 1353 Gene3D - 345 433 IPR042197 -
Vimu1g00527 1353 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 176 - -
Vimu1g00527 1353 Coils Coil 1286 1306 - -
Vimu1g00527 1353 Gene3D - 6 175 IPR035897 -
Vimu1g00527 1353 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 754 IPR044974 GO:0006952
Vimu1g00527 1353 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 146 IPR035897 -
Vimu1g00527 1353 PRINTS Disease resistance protein signature 733 749 - -
Vimu1g00527 1353 PRINTS Disease resistance protein signature 380 394 - -
Vimu1g00527 1353 PRINTS Disease resistance protein signature 287 301 - -
Vimu1g00527 1353 PRINTS Disease resistance protein signature 210 225 - -
Vimu1g00527 1353 Gene3D Ribonuclease Inhibitor 719 904 IPR032675 -
Vimu1g00527 1353 Gene3D Ribonuclease Inhibitor 542 718 IPR032675 -
Vimu1g00527 1353 SMART till_3 7 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00527 Vimu-Chr1 3232974 3237796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00527 8 822 WRKY Transcription Factor Family AT4G12020 30.585 5.70e-99 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00527 - - var:108338187 2059.65