Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00524 ATGAAAAGGAGGAACATAGCCCACAGGTTAGAAGAAGCTTCCCAAGTTTTACAGAGATTAACAATGGATGTGCCCAAGTTACATAACTCTGATGAAGAAGACAAGAAAGAAGATGAAGTTGTGCTTCCCGGCTTCAGATTTCATCCTACAGACGAAGAGCTCGTGGGCTTTTATCTCAGGCGAAAGGTGGAGAAGAAGCCTCTCAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAGTAAGATCACCTTCCTCTTCGTTAATTATTTTTTATATGATTATTGTATTGACTGGTTTGGGTTTTTGTGTGGTGGTGATTGGTGTATGTATGAAGAAGCAAGTTCTGTGGGGGAGAAGGAGTGGTATTTCTTCTGCATAAGAGGGAGAAAGTACAGAAACAGTATAAGGCCTAATAGAGTGACAGGTTCTGGGTTTTGGAAAGCCACAGGGATTGATAAACCGATATACTGTGTTAAAGAACCCCATGAATGCATTGGGTTGAAGAAATCGTTGGTGTATTACCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCCAATGAAAAATCCACCACTAATGACATTCAAGAAGCTGAAGTGTGGACGCTATGTCGAATATTCAAACGAGTCCCATCTTACAAGAGGTACACACCAAATTTGAAAGACTCAAACACAGCACCAATCACGAAGCCAAACCCCACAAACTCTTCAAGTTCCAAAACATGCAGTTTAGAATCTGAGACATTCACAAACTCACCATCATCACTGCTCCTTCACCAAAACCAAATCATCAAACCAGTTTTTGGACATGTTGACCAACACCCTCCCACATCCTTTTCTTACTCCTCTTTTTGGAACCACCAGAATCTTGAATTGGCTCATGAGAATTGGGATGATCTCACTTCTGTCGTTCAGTTTGCTGTTGATCCATCCAGGCTTTCTGATCACTGTAAAGAGTTTAATGCATTTTGA 1023 0.4115 MKRRNIAHRLEEASQVLQRLTMDVPKLHNSDEEDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPSKITFLFVNYFLYDYCIDWFGFLCGGDWCMYEEASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNEKSTTNDIQEAEVWTLCRIFKRVPSYKRYTPNLKDSNTAPITKPNPTNSSSSKTCSLESETFTNSPSSLLLHQNQIIKPVFGHVDQHPPTSFSYSSFWNHQNLELAHENWDDLTSVVQFAVDPSRLSDHCKEFNAF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00524 340 Pfam No apical meristem (NAM) protein 43 201 IPR003441 GO:0003677|GO:0006355
Vimu1g00524 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 38 279 - -
Vimu1g00524 340 ProSiteProfiles NAC domain profile. 41 226 IPR003441 GO:0003677|GO:0006355
Vimu1g00524 340 SUPERFAMILY NAC domain 40 225 IPR036093 GO:0003677|GO:0006355
Vimu1g00524 340 Gene3D NAC domain 50 229 IPR036093 GO:0003677|GO:0006355
Vimu1g00524 340 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00524 Vimu-Chr1 3221306 3223538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00524 31 227 NAC Transcription Factor Family AT5G39820 49.772 5.02e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu1g00524 NAM 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00524 - - gmx:100784323 433.721