Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00508 ATGACATCCAACAGTTCTTTGAAAGGGGAATTGACAAAGAAGACTCCATTTTTGGGGTTGAGACGATGGGTTTTGATTGGAGTAGGTGTTGGTGCATTTATAGTGCTTATTCTTTGTATATTATCGATATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTTTGGACAAGTATTCTGTATCCCAAATACCAAATGTCTCAAAAGATATCGACGTTGACAAGGTTGGGGTGCAGAGTTCTCATGTCCAACCAGAACATGTGCTTATGCCTGTTGTTCATAACATGACAAGTGATAAGAATTCAGATAATATATCAGTTCATTTGGGTAACAGCAAATCTGGGGATCCTGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCAATGTCAGCTGAAGAAGGAAGCTCTGGGAATGTTAAGAAACAATCCACATTGTCAAATGGAGGGTTGGCTACTGCCTCTCCATTAGTTGGCTTGCCTGAATTTTCTCATCTTGGGTGGGGCCACTGGTTTACACTCAGAGATCTGGAAATGGCAACCAAACGATTCTCAGCTGAGAACATTATTGGTGAGGGTGGATATGGTGTTGTTTACAAGGGAATACTGATTAATGGAATTGAGGTGGCAGTGAAGAAGCTTCTTAACAACTTGGGACAGGCTGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGACATGTTAGACATAAGCATCTCGTACGCCTTCTCGGATATTGTGTAGAGGGAGTTCATAGGCTGCTTGTGTATGAATATGTGAACAATGGTAACTTAGAACAGTGGTTACATGGAGACATGCACCAACATGGGACACTTACTTGGGAGGCCCGCTTGAAAGTTATACTTGGCACAGCCAAAGCTGGACCTTGTCATGCTGATGAACCCCTCTATTATACTGTTACTGGTGGCAGGCTTGCTTATTTACATGAAGCAATAGAACCAAAGGTTATTCATCGGGACATAAAGTCTAGCAACATATTGATTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGCTTGGCCAAACTTTTGGATTCAGGAGAAAGTTACATAACCACAAGAGTAATGGGAACTTATGTGGCACCAGAATACGCGAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTGCTGGAAGCAGTTACTGGAAGGGATCCTGTAGACTATGCTCGTCCTGCCAATGAGGTGCCTAATCCTTATGAACTCTGCTACCTTGCTAGTTCTAACCATGCTTTCTACTGGAACGTTAATCTAGTTGAATGGCTCAAAATGATGGTAGGAACAAGAAGGGCTGAAGAAGTAGTGGACTCAAACCTTGAAGTTAAACCACCTTTGCGTGCTTTGAAACGAACTCTTCTGGTTGCACTTAGATGTATTGATCCTGATGCTGACAAGAGGCCCAAAATGAGTCAAGTTGTGAGAATGCTTGAAGCTGATGAATATCCATACCGAGAGGATAGAAGAAACAGAAAAAGTGGCACTGTCAACATGGAAATTGAAACTGTGAAGGATATTTCGGGTCCATCTGACGCTGAAAGGATGGGGCATACTGAAACAACTCAAGGATAG 1626 0.42 MTSNSSLKGELTKKTPFLGLRRWVLIGVGVGAFIVLILCILSIWVMFRRKSRRSLDKYSVSQIPNVSKDIDVDKVGVQSSHVQPEHVLMPVVHNMTSDKNSDNISVHLGNSKSGDPDNISQCSSIYHHERGFSSMSAEEGSSGNVKKQSTLSNGGLATASPLVGLPEFSHLGWGHWFTLRDLEMATKRFSAENIIGEGGYGVVYKGILINGIEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDMHQHGTLTWEARLKVILGTAKAGPCHADEPLYYTVTGGRLAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESYITTRVMGTYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPANEVPNPYELCYLASSNHAFYWNVNLVEWLKMMVGTRRAEEVVDSNLEVKPPLRALKRTLLVALRCIDPDADKRPKMSQVVRMLEADEYPYREDRRNRKSGTVNMEIETVKDISGPSDAERMGHTETTQG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00508 541 SMART serkin_6 189 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00508 541 ProSiteProfiles Protein kinase domain profile. 189 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00508 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
Vimu1g00508 541 Gene3D Phosphorylase Kinase; domain 1 171 264 - -
Vimu1g00508 541 FunFam Putative receptor-like protein kinase 171 264 - -
Vimu1g00508 541 MobiDBLite consensus disorder prediction 503 541 - -
Vimu1g00508 541 Gene3D Transferase(Phosphotransferase) domain 1 265 513 - -
Vimu1g00508 541 SUPERFAMILY Protein kinase-like (PK-like) 173 497 IPR011009 -
Vimu1g00508 541 FunFam Putative receptor-like serine/threonine-protein kinase 265 510 - -
Vimu1g00508 541 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Vimu1g00508 541 PANTHER OS01G0323000 PROTEIN 1 514 - -
Vimu1g00508 541 CDD STKc_IRAK 195 496 - -
Vimu1g00508 541 Pfam Protein tyrosine and serine/threonine kinase 192 495 IPR001245 GO:0004672|GO:0006468
Vimu1g00508 541 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00508 Vimu-Chr1 3118928 3122251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00508 19 498 Trihelix Transcription Factor Family AT1G70460 36.475 4.07e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu1g00508 PK_Tyr_Ser-Thr 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00508 - - gmx:100798916 895.19