Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00507 ATGGCGAATGAGAAGGATCGTTTTTATGACCCTTTTCATTACAACCACCACGAACACCAACTCAACCACTCTTCAAACTTTCCATTCTTTAGGGACAACAACTCAGCACCAATTGCCTCACAAAACTTTCAAGGGTTTCATCATCATCATCATCATAATCCTTCTCATCAACGTACCACTTTCACTGACTGCTTACATGGTTCCATGGATTACAACACCCTCTCCAGAGCCTTTGACATGTCTTGCTCATCATCTGAAGTGCTCTCTTCCATTGATGAAAACCCCAAGAAGCCTAGTGCAGGAGACTCGGCAGGGATCAGTGGAAACCAGTCAACACCCAATTCATCGGTTTCCTCCTCATCCAATGAAGCTGAAGCACTCTTAGAAGAAGACTCCACCAAAGGCCAGAAGAAAGATAAACAGCCAAAAGGGTGCGAAGATGAAGAAGAAAAGCCTAAGAAAGAAAATAGTGTGGAACAATCATGGGAACTTAACCCTAAAATAATTGCTATCGGTTTGGTGAGTTACTTGAGGCACATAGATATATATGTTGCGGTGAATTTGACTGATATTTTGGAGCGTTTCAGGAACAAGCCTAAAAAGAAAGAGAAAAAGCCAAGAGAGCCTCGTTTTGCCTTCTTGACTAAAAGTGAGATAGACAACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAACAGTCCCTACCCAAGGAGCTACTATAGGTGCACCAGTCAGAAGTGCAGCGTAAAGAAAAGGGTGGAAAGATCATTCCAAGATCCATCAATTGTGATCACAACATATGAAGGGCAACACAACCATCACTGTCCAGCAACGCTAAGGGGCAGCGCCGCCACCATGCTGTCTGCACCTCCTTTTTTTGGTTCCTCTTACATGGGCTCAAGCTTACCTCAAGATTTTCTTGCTCAGTTTCTTCCAAGTTATACCCAAAATGATCACCAAAATCCAATGTTCAACCAAAACCTTTCCAACAATCTCCATCTCCAGCCGCAACAACAGCAGCAGCACCAGTTCCAACTCCCTCGTGACTATGGTTTGCTGCAAGACCTGCTGCCATCATCATCATTTCCAGGCAAACAAGAGCCATGA 1125 0.4382 MANEKDRFYDPFHYNHHEHQLNHSSNFPFFRDNNSAPIASQNFQGFHHHHHHNPSHQRTTFTDCLHGSMDYNTLSRAFDMSCSSSEVLSSIDENPKKPSAGDSAGISGNQSTPNSSVSSSSNEAEALLEEDSTKGQKKDKQPKGCEDEEEKPKKENSVEQSWELNPKIIAIGLVSYLRHIDIYVAVNLTDILERFRNKPKKKEKKPREPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHNHHCPATLRGSAATMLSAPPFFGSSYMGSSLPQDFLAQFLPSYTQNDHQNPMFNQNLSNNLHLQPQQQQQHQFQLPRDYGLLQDLLPSSSFPGKQEP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00507 374 SMART WRKY_cls 222 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00507 374 SUPERFAMILY WRKY DNA-binding domain 215 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00507 374 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 43 338 IPR044810 GO:0003700
Vimu1g00507 374 Pfam WRKY DNA -binding domain 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00507 374 MobiDBLite consensus disorder prediction 103 126 - -
Vimu1g00507 374 Gene3D WRKY domain 208 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00507 374 ProSiteProfiles WRKY domain profile. 217 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00507 374 MobiDBLite consensus disorder prediction 89 159 - -
Vimu1g00507 374 MobiDBLite consensus disorder prediction 127 159 - -
Vimu1g00507 374 FunFam WRKY transcription factor 57 208 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00507 Vimu-Chr1 3109580 3112296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00507 1 287 WRKY Transcription Factor Family AT4G18170 41.837 4.08e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g00507 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00507 - - gmx:100790175 474.937