Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00505 ATGTCTGGCATTGATGTTACTGTAATAACTCCAAAAGTCCCAAAAGCAGTTTCACCTGTTTCTATTGCAGCAGAGGGGGACACCTTAAGGCGGCCACGTGGACGGCCAGCCGGCTCAAAAAACAAGCCTAAACCACCAATTATTGTCACCAGAGAAAGTGCCAATGCACTGAAGGCTCATGCTATGGAAGTGAGTTCAGGCTGTGATGTGAATGAAAGTTTGTTGAACTTTGCAAGGAGAAAGCAACGTGGCCTTTACATACTCAATGGAACAGGCTGTGTGACAAATGTAACACTGCGTCAACCAGGGTCATCTGGTGCCATTGTGACCCTTCATGGTAGGTTTGAGATTCTGTCACTCCTGGGGTCAATCCTTCCCCCACCAGCCCCTCCAGGGATCACAGGCCTCACAATTTACTTGGCAGGTGCTCAAGGGCAAGTTGTGGGAGGTGCTGTGGTTGGTGCTTTGATTGCTTCAGGCCCTCTTGTAATCATGGCTGCATCATTCATGCATGCTACTTTCGATCGTCTGCCTTTGGAAGATGATGAACTTTCTGCTGCAATGCAGAATCAGCATTACCAAAATGGACGCACCCACCATCTTGACATCTCTGACTTGTATGCAATGCCACAGAACCTGCTCATGAATGGTACAATGCCCCAAGAGATATACTCTTGGGCACCAGGGCGGAACTTGTCAAAAACCTGA 708 0.4831 MSGIDVTVITPKVPKAVSPVSIAAEGDTLRRPRGRPAGSKNKPKPPIIVTRESANALKAHAMEVSSGCDVNESLLNFARRKQRGLYILNGTGCVTNVTLRQPGSSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPLVIMAASFMHATFDRLPLEDDELSAAMQNQHYQNGRTHHLDISDLYAMPQNLLMNGTMPQEIYSWAPGRNLSKT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00505 235 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 197 IPR014476 GO:0003680
Vimu1g00505 235 SUPERFAMILY AF0104/ALDC/Ptd012-like 54 185 - -
Vimu1g00505 235 FunFam AT-hook motif nuclear-localized protein 57 198 - -
Vimu1g00505 235 Pfam Plants and Prokaryotes Conserved (PCC) domain 59 169 IPR005175 -
Vimu1g00505 235 CDD DUF296 60 140 IPR005175 -
Vimu1g00505 235 ProSiteProfiles PPC domain profile profile. 54 192 IPR005175 -
Vimu1g00505 235 Gene3D - 56 200 - -
Vimu1g00505 235 MobiDBLite consensus disorder prediction 23 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00505 Vimu-Chr1 3096165 3096872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00505 13 234 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 71.875 1.56e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00505 - - gmx:100804941 404.831