Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00501 ATGAGTTTCCCGCTAGATATATCTTTATCTTCCCGCCATTTCACTTGTATTCCTGCATTCCTCGGTTTCCCATTTCGCAAATCCAATTCTTCTTTCCACTTCACAGTTTCAGTCGCAAAGCAAATGATCACACAACAAGAACCCGATTTAAATCTCAATCACCTTAAGCTATATTACGGTTTGTTACTTCCCGTTTTTTCTGTTCCTTTATTCTCCGTATCAAAGTATCATAATTTGTATTGTTTCGAACTGGGTTTGACCTCTCTTCAACGTTTCCTCTTCTCGTTTCCCCAGGAAAGCTGTTTCCTTTTGCCGATTTATGCAGATGGGTGTCTTATGGCAACGAAATATGCTAGACTTTGTTATCCTTGTTCTTTTCTGAAATCCGTCTCTTTTTATGCGAAGCACCCTGGTTGTGATCAATCCTATATGGGACGGAGAGAGTTTTCCTTCACTCTGGTGGATGATATTTATCTGCGTTTCCAATCTTTCAACAATGCACACGAGCTCGAAAATTCAGTCAAAGAGAAGTCCCCTGTTAAGATAGATATTGGGCCTGTCTACTCTGTTGATCCTGCAAAAAGGCACGCCTATGCGCAGAGTGAAAATAATGTCTTTGCCCCAGTTGAGAGGGAGTTGATTTTCGATATAGATATGACAGACTATGATGATGTTAGATACTGCTGCTCAGGTGCTGACGTTTGTTTGGTTTGCTGGCCGTTAATGACTATAGCAATCAAAGTGATTGATACTGCCTTGAGAGATGACTTTGGCTTCAAGCACGTTCTCTGGGTATACAGTGGACGAAGAGGTGTTCATTGCTGGGTCTGTGATGGGAAGGCAAGAAGGTTGTCTAATGAGCAGAGAGGTGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGACGGGTGCAGCCCTTCATCCTTTCTTGGCGACATCATACACTAACGTTCTCAAAGACTATTTCGAGAAAAATCTGCTTACCGGACAAAATTTACTTGCTACCGAGGAGAGATATGAGAAAATTCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTCGGGGGAGATGGGACGATAGTAGGCGGTCTTCTAGTGCAAAAGAAGACATCAATGTTGTTCGATGGGAACAACTCAAACAGTTGCTGCAATCTGGGAAACATAAGGCGCAAGGGCTGCGCCGGTGCGTTGAAGAGATTGTGTTCTCCTTTACTTATCCGAGGCTTGATATGGAGGTTTCTAAACATATGAATCATTTGCTCAAGGCACCATTCTGTGTACATCCTAAAACAGGTCGTGTTTGTGTCCCAATTGATCCAAATCGGTGCGACGAATTTGATCCTACTACAGTACCCACCCTTTCACAGCTGATAGAAGAGCTTAATTACGAAGGCTCAAGATCTGATGTTGATGGTGAATTGAATAGAACTTCGCTTGGACATGCCATTACGCTCTTCAGATCGTCATTCTTACAGCCTTTACTAAAAGTCTGCAAGGAAGAGATAGAAAATTCGTATAACGTAAAATTGCAGCAGTCGAAGAATTCCCTTGGTTGGTAA 1593 0.42 MSFPLDISLSSRHFTCIPAFLGFPFRKSNSSFHFTVSVAKQMITQQEPDLNLNHLKLYYGLLLPVFSVPLFSVSKYHNLYCFELGLTSLQRFLFSFPQESCFLLPIYADGCLMATKYARLCYPCSFLKSVSFYAKHPGCDQSYMGRREFSFTLVDDIYLRFQSFNNAHELENSVKEKSPVKIDIGPVYSVDPAKRHAYAQSENNVFAPVERELIFDIDMTDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALRDDFGFKHVLWVYSGRRGVHCWVCDGKARRLSNEQRGAIADYFRVYKGNENSHKKVSLTGAALHPFLATSYTNVLKDYFEKNLLTGQNLLATEERYEKILSMIPDESIASELRGRWDDSRRSSSAKEDINVVRWEQLKQLLQSGKHKAQGLRRCVEEIVFSFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLSQLIEELNYEGSRSDVDGELNRTSLGHAITLFRSSFLQPLLKVCKEEIENSYNVKLQQSKNSLGW 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00501 530 Pfam DNA primase small subunit 215 450 IPR002755 GO:0003896|GO:0006269
Vimu1g00501 530 Gene3D DNA primase, PRIM domain 110 511 - -
Vimu1g00501 530 CDD AE_Prim_S 132 459 IPR014052 GO:0003896|GO:0006269
Vimu1g00501 530 FunFam DNA primase 108 511 - -
Vimu1g00501 530 SUPERFAMILY Prim-pol domain 143 473 - -
Vimu1g00501 530 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 130 470 IPR014052 GO:0003896|GO:0006269
Vimu1g00501 530 PANTHER DNA PRIMASE SMALL SUBUNIT 117 515 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00501 134 530 Core DNA Replication Machinery Family AT5G41880 68.342 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00501 K02684 - gmx:100780574 756.518