Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00500 ATGCCTGATTTTCCTATATGGATTACTTTTATATCTTTGCAACAGGGTTCAATGGAGATGGAATTTTTCTCCGATTATGGCGATGCCAACAGGTACAAAATTCAAGAAGTCATTGGGAAAGGCAGTTATGGTGTTGTTTGTTCAGCTATAGACACTCATACTGGCGAGAAAGTAGCAATTAAAAAGATACATGATATCTTCGAGCATGTATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCATGTTATGTTGCCACCTTCGAGGAGGGACTTTAAGGATATTTATGTCGTTTTTGAGCTAATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAATTTTTTCTGTACCAGTTGCTTCGAGCACTGAAGTATATTCACACTGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATATTAGCCAATGCAAACTGTAAACTTAAAATATGTGATTTTGGGTTAGCTAGAGTTGCTTTTAGTGACACGCCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCGGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTGATAGGAAAGCCTCTTTTTCCTGGAAAAAATGTTGTGCATCAGTTGGATCTGATGACAGATCTGCTTGGTACGCCCTCGCTTGATACGATATCCCGGGTACGCAATGATAAGGCACGGAGATACCTGACTAGTATGAGGAAAAAACAGCCTATACCATTTACACAAAAGTTTCCTAATGCAGATCCTTTAGCCCTACGACTGCTTGAAAAGTTACTCGCCTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCGAAAGTTGAGAGGGAGCCATCATGCCAGCCTATTACAAAAATGGAGTTTGAATTCGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATTTTTCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATAAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAGAAGCAATTTGCTCATCTTGAGGAAACTGGTGGCAAAAGTAGTCCAGTTCTTCCACCTGAAAGAAAGCATGTATCACTTCCCAGGTCAACAATTATACATTCAAATACAGTACCCACAAAAGAGCAATCAAATATTGTTTCCAGCAAAATCAGGCAAACAACTGAGGAATACAGCAATAATTCTAGGGATACAGAAAATCCTGCGCCAAGGTCCATTCAGGGTCTGCAAAAATTTTCACATGCAAAACCTGGTAAAGTTGTTGGGCCGGTTATTCCATACGAGTATGCAAGTGTTGTCAAGGGTTCATACGATCCCAGGACATTTATGAGAGGTTCTGTTCCTCCTTCTCAACCTACTCCCCCGACGAATCATTATCAAAGAGTAACTTCTGGGAAACAAGAAAGGTCAGCAACAGAAGCTGAGAAGTGTGTATCTTTACAATCAAAACTTGCACAGCAATGTTGTGTGAATGGCCAAATAGCACCAGAAATAGCTATAAATATTGATTCCAACCCTTTTTTCATGACACGAGCAGGAGTGAACAAGATAGAGCAGGATGACCGAATAGCCATTGATACAAAGTTGCTGCAAACAAAAGCTCATCAATATGGTGGGATTAGTACAACTGCTCATAGAAAGGTTGGACCAGTACAGTATGGTATTACAAGGTTGTTCTAG 1857 0.3985 MPDFPIWITFISLQQGSMEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHVSDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFTQKFPNADPLALRLLEKLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFKKQFAHLEETGGKSSPVLPPERKHVSLPRSTIIHSNTVPTKEQSNIVSSKIRQTTEEYSNNSRDTENPAPRSIQGLQKFSHAKPGKVVGPVIPYEYASVVKGSYDPRTFMRGSVPPSQPTPPTNHYQRVTSGKQERSATEAEKCVSLQSKLAQQCCVNGQIAPEIAINIDSNPFFMTRAGVNKIEQDDRIAIDTKLLQTKAHQYGGISTTAHRKVGPVQYGITRLF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00500 618 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 374 - -
Vimu1g00500 618 FunFam Mitogen-activated protein kinase 118 346 - -
Vimu1g00500 618 MobiDBLite consensus disorder prediction 425 463 - -
Vimu1g00500 618 ProSiteProfiles Protein kinase domain profile. 32 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00500 618 Gene3D Phosphorylase Kinase; domain 1 47 369 - -
Vimu1g00500 618 Gene3D Transferase(Phosphotransferase) domain 1 118 346 - -
Vimu1g00500 618 SUPERFAMILY Protein kinase-like (PK-like) 28 327 IPR011009 -
Vimu1g00500 618 FunFam Mitogen-activated protein kinase 22 125 - -
Vimu1g00500 618 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vimu1g00500 618 SMART serkin_6 32 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00500 618 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu1g00500 618 Pfam Protein kinase domain 32 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00500 618 MobiDBLite consensus disorder prediction 504 527 - -
Vimu1g00500 618 CDD STKc_TDY_MAPK 31 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00500 Vimu-Chr1 3059049 3063180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00500 14 441 MAP Kinase Gene Family AT2G42880 86.916 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu1g00500 Pkinase 5.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00500 - - gmx:100811788 1041.18