Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00486 ATGGAGTTTCCGAACGAAGCAATATCAGAAGGGTGTTCTCAGAAGAAAAGTGGAAGAGGGAAAATAGAGATCAAGCGGATCGAGAACACCACCAATCGGCAAGTTACCTTCTGCAAACGTCGCAACGGCTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTCTGTGATGCCGAAGTTGCTCTTGTTGTTTTCTCAAGCCGTGGACGCCTTTATGAGTATGCAAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGCGCTGCTTCCACAAATGCAGAATCTGTCTCTGAAGCTAATACACAGGTAAATTTCGTTAGTGAACAAATCAAACAAAAGTTACAAAATCCTTTCTCTCTCTCTCTCTATATATATATATATATATATATAGTTAGGGTAATTTTAGGTTGA 417 0.3981 MEFPNEAISEGCSQKKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASTNAESVSEANTQVNFVSEQIKQKLQNPFSLSLYIYIYIYIVRVILG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00486 138 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Vimu1g00486 138 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Vimu1g00486 138 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Vimu1g00486 138 FunFam MADS-box transcription factor 21 29 95 - -
Vimu1g00486 138 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Vimu1g00486 138 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Vimu1g00486 138 SUPERFAMILY SRF-like 18 98 IPR036879 GO:0003677|GO:0046983
Vimu1g00486 138 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Vimu1g00486 138 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 109 - -
Vimu1g00486 138 Gene3D - 29 98 IPR036879 GO:0003677|GO:0046983
Vimu1g00486 138 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Vimu1g00486 138 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00486 Vimu-Chr1 2961781 2967420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00486 13 104 MADS-box Gene Family AT3G58780 86.957 1.51e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu1g00486 SRF-TF 6.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00486 K09264 - gmx:100792224 202.986