Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00482 ATGGAAACCAAGAAGCTTCAGCTTCGCTTCTCGCTCGGCCGGCAATCCTCCCTAGCGCCGGAGCGCGACGGCGCGGGCGACGTGTCGGAGGCGCTGGATCCGACGGTTCGGTTGATGTATCTGGCCAACGAAGGAGACTTGGACGGGATCGAGGAACTGCTGGACGCGGGGAGCGACGTCAATTTCACCGACATTGACGGCCGAACCGCGCTCCACGTCGCCGCCTGCCAGGGACGCACCGACGTTGTTGACCTGCTGCTCCGACGAGGCGCTGAAGTTGATCCGCGAGACCGCTGGGGCAGCACCGTAATTTCACTTACCTCCTCTTTTCGCTATTCTTACACTAGCTGTTACTGA 357 0.6106 METKKLQLRFSLGRQSSLAPERDGAGDVSEALDPTVRLMYLANEGDLDGIEELLDAGSDVNFTDIDGRTALHVAACQGRTDVVDLLLRRGAEVDPRDRWGSTVISLTSSFRYSYTSCY 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00482 118 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 35 108 IPR039323 -
Vimu1g00482 118 ProSiteProfiles Ankyrin repeat region circular profile. 66 98 - -
Vimu1g00482 118 SMART ANK_2a 66 95 IPR002110 GO:0005515
Vimu1g00482 118 SMART ANK_2a 32 62 IPR002110 GO:0005515
Vimu1g00482 118 Pfam Ankyrin repeats (3 copies) 38 97 IPR002110 GO:0005515
Vimu1g00482 118 Gene3D - 29 107 IPR036770 -
Vimu1g00482 118 SUPERFAMILY Ankyrin repeat 38 109 IPR036770 -
Vimu1g00482 118 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00482 Vimu-Chr1 2924637 2924993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00482 9 105 MAP Kinase Kinase Kinase AT3G58760 59.459 9.16e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00482 - - gmx:100812598 182.57