Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00478 ATGGAGCCCAATTTGGGATATTCCAGGATCTTCCGTTTACTCTTCCTTGCTTCAACTTCATTGATTTTCCTCTCACACTGGGCTTATGCTGCCACTCCCAAGCTCAACAATCAAGAGATGAAGGCACTGAAGGATATAGGGAGCAAGATTGGAAAGAAAGATTGGGACTTTGGAGTGGATCCTTGCAGTGGAAAAGGGAGTTGGAATGTTTCTGATGACAGGAAAGGCTTTCAGAGCTCTGTGATATTCTTGAAGGGTCAGAATCTGTCTGGTACTCTCTCACCAATGTTTTCCCAGCTTCAGTATCTCACAATATTAGACCTCAGTCGTAATATCATCACTGGTTCTATACCTGAACAGTGGAGTACCATGGGCTTGGTTGAGATCTCTTTCATGGGAAACAAATTATCAGGGCCATTCCCCAAAGTTCTCACCAATATCACAACCCTCAGAAACTTGAGTATTGAAGGAAACCAATTTTGGGGCCACATTCCAACGGAGATTGAGAAGTTGGTCAATTTAGAAAAACTCGTTCTATCATCCAATGGATTCACAGGAGCATTGCCACCCTCACTTTCCAAGTTGACCAAGTTGATTGATTTGAGGATAAGCGACAATAATTTCTTTGGGAAGATACCTGATTTCATTAGTAACTGGACAGTGATAGAAAAGCTGCATATGCACGGTTGTTCTCTTGAGGGGCCAATACCTTCCAGCATTTCTGTCTTGACAAGATTAAGTGATTTGAGGATAACTGACCTAAAAGGTGATAAGACCTCAGCTTTCCCACCACTAAATAACTTGAAGTCCATGAGGACATTAGATTTGAGTTACAATAACTTGAGTGGAGAGATACCTGAATCTTTTGCCGAACTTGACAAAGTAGATTTCATGTATCTTACTGGGAACATGCTATCCGGGATTATACCTGCTTGGATCCTTGGAAATAACAAAAACATAAACCTTGCTGAAAGCTACTCTTCATCTGTAGATACACAAAATAAGATTCATTCATGCTTAAAAAGGAACTTCCCATGCCCTGCTTCAGTTAGCCAATATCAGTACGCCTTGAACATTAATTGTGGTGGTAATGAAGCAAATATCAGTGGTCATATTTATGAAGCTGACGTTGAACGAAAGGGTGCTGCAATGTTATATACTGGCCAGGTTTGGGCTCTGAGCAGCACTGGAAATTTCATGGACAATGATATTGACTCTGATCCATACATTGTGGCCAATACTTCTAGACTTAATAATGTCTCTGCACTCAGCTCACAACTATACACAACAGCTCGTGTTTCTCCCCTTGCTCTCACATACTATGGCCTCTGCCTAATAAATGGAAATTACACAATCAAGCTTCACTTCGCAGAGATTATTTTCATCAATGATAGATCACTTAATAGTCTCGGAAAGAGGGTATTTGACGTCTATATCCAGGGGAATTTAGTGCTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGACATTCAATGCTACTGTCACCCAACATACTTTGAAGATTCACTTCTATTGGGCCGGAAAAGGAACCACTGGCATTCCCACAAGAGGAGTTTATGGACCACTAGTGTCTGCTATTTCAGTAAGCCCTAATTTTAAACCTCCATCAGGGAAGGATGACAGCAGAACTGATGTCATACTGGCAATTGGCATAGTTGCTGGTGTTTTAGTTCTTCTACTTCTGGGGCTAGTTTTTATGAGGTGGATGGGATGGTTAGGAGGTAAAGATCCAGTGTATAAAGATAACCTTGGTGGGTTGGGCCTACTGTCAGATGGTACAATAATAGCAGTAAAGCAGCTGTCTTCAAAATCCAAACAAGGAAACCGTGAGTTTGTGAACGAGATGGGATTGATATCTGGACTCCAACATCCCAATCTTGTTAAGCTTTATGGATGTTGTGTGGAGGGGAACCAGCTAATACTGATATATGAGTACATGGAAAATAATTGTCTATCTCGGATTCTTTTTGGTAAGCTTCATGATGAATCAGGTTTATCCATACTTGCTGCCTATGTTTTGCAAGAGAGAGGGAGTATTCTGGAGCTGGTTGACCCAGATTTGGGTTCAGAATATTCAACTGAGGAGGCCATGGTGGTGCTAAATGTGGCTCTCTTATGTACCAACGCATCTCCTACACTTAGGCCAACAATGTCCCAAGCTGTGAGCATGCTTGAAGGTTGGACTGATATTCAGGATCTACTTTCTGATCCGGGATATTCAGCTGTTAGTTCCAGTTCCAAATATAAGAGTATAAGAAATCACTTCTGGCAGAATCCTAGTAGAACACATAGCATGTCAATACCTAGTGTATATACTGATTCCTCTGGCTCTCATGTTGAAACAGAAATGAGCTATCGTCTTGTAACAACAGTTAATTCAGATGGATCAGACAAGTCAAACTAG 2448 0.413 MEPNLGYSRIFRLLFLASTSLIFLSHWAYAATPKLNNQEMKALKDIGSKIGKKDWDFGVDPCSGKGSWNVSDDRKGFQSSVIFLKGQNLSGTLSPMFSQLQYLTILDLSRNIITGSIPEQWSTMGLVEISFMGNKLSGPFPKVLTNITTLRNLSIEGNQFWGHIPTEIEKLVNLEKLVLSSNGFTGALPPSLSKLTKLIDLRISDNNFFGKIPDFISNWTVIEKLHMHGCSLEGPIPSSISVLTRLSDLRITDLKGDKTSAFPPLNNLKSMRTLDLSYNNLSGEIPESFAELDKVDFMYLTGNMLSGIIPAWILGNNKNINLAESYSSSVDTQNKIHSCLKRNFPCPASVSQYQYALNINCGGNEANISGHIYEADVERKGAAMLYTGQVWALSSTGNFMDNDIDSDPYIVANTSRLNNVSALSSQLYTTARVSPLALTYYGLCLINGNYTIKLHFAEIIFINDRSLNSLGKRVFDVYIQGNLVLKDFDIQREAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVSPNFKPPSGKDDSRTDVILAIGIVAGVLVLLLLGLVFMRWMGWLGGKDPVYKDNLGGLGLLSDGTIIAVKQLSSKSKQGNREFVNEMGLISGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRILFGKLHDESGLSILAAYVLQERGSILELVDPDLGSEYSTEEAMVVLNVALLCTNASPTLRPTMSQAVSMLEGWTDIQDLLSDPGYSAVSSSSKYKSIRNHFWQNPSRTHSMSIPSVYTDSSGSHVETEMSYRLVTTVNSDGSDKSN 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00478 815 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 354 546 - -
Vimu1g00478 815 Gene3D Ribonuclease Inhibitor 191 343 IPR032675 -
Vimu1g00478 815 SUPERFAMILY L domain-like 81 319 - -
Vimu1g00478 815 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 190 255 - -
Vimu1g00478 815 Gene3D Transferase(Phosphotransferase) domain 1 661 751 - -
Vimu1g00478 815 FunFam Leucine-rich repeat receptor protein kinase EMS1 93 189 - -
Vimu1g00478 815 Gene3D - 352 546 - -
Vimu1g00478 815 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
Vimu1g00478 815 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 683 773 - -
Vimu1g00478 815 SMART tyrkin_6 578 739 IPR020635 GO:0004713|GO:0006468
Vimu1g00478 815 Pfam Malectin domain 356 541 IPR021720 -
Vimu1g00478 815 SUPERFAMILY Protein kinase-like (PK-like) 602 675 IPR011009 -
Vimu1g00478 815 Gene3D Phosphorylase Kinase; domain 1 587 660 - -
Vimu1g00478 815 Pfam Leucine Rich Repeat 272 292 IPR001611 GO:0005515
Vimu1g00478 815 Pfam Protein tyrosine and serine/threonine kinase 608 673 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00478 Vimu-Chr1 2901361 2910723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00478 685 757 Receptor kinase-like Gene Family AT1G53430 63.636 1.33e-20 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu1g00478 Malectin 3.7e-44 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00478 - - vun:114195543 1170.22