Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00476 ATGGTTCAACCAAGTAATGTAGCTCCCCTATCATCCACCCCACTTTCTTCCTCCGATGATAACACCTTTGATGATGTTACCGATTCTTCCACTCATCCAAAATCCCCCTCATCCTCATCATCATCAAAGAGGACACGCGGTAGGCCTGTGGGCTCCAAGAACAAACCAAAATTAACCCTTGTGATTGACCAAGACAATGAGCATACCCAAAAACCTATTTTCATTCAAATCCCTAAAAATTCTGATGTGATTGAGGCACTTATCCAATTCTCCTGTGATTACCAAATTAGCATCATGGTGCAAAGTGCATCGGGATCTATTAGGAACGTCACTCTCCGTGACAATGAATCCATAACTTCTGCTTTCATTGTTCATGGACCCTTCACATTAGTTTCCCTCATTGGCACTTGCATAAATAACAACTCTTGTACTATTTCATCATCGTCTAATCTTGACATTGATTGTTTCTTTAACATTTCCTTTTGTTCAAATATAGGTCAAAGTTTTATTGGAGTTGTTGGAGGGAAGGTTATCGCTGATGATGATGTTGTTGTAGCTGCTACTATTTTCAATAACTCTGAGAATAACAAAGGTGAAAACCAATTATGA 609 0.3908 MVQPSNVAPLSSTPLSSSDDNTFDDVTDSSTHPKSPSSSSSSKRTRGRPVGSKNKPKLTLVIDQDNEHTQKPIFIQIPKNSDVIEALIQFSCDYQISIMVQSASGSIRNVTLRDNESITSAFIVHGPFTLVSLIGTCINNNSCTISSSSNLDIDCFFNISFCSNIGQSFIGVVGGKVIADDDVVVAATIFNNSENNKGENQL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00476 202 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 191 IPR005175 -
Vimu1g00476 202 ProSiteProfiles PPC domain profile profile. 67 202 IPR005175 -
Vimu1g00476 202 MobiDBLite consensus disorder prediction 1 47 - -
Vimu1g00476 202 Gene3D - 71 197 - -
Vimu1g00476 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 194 IPR014476 GO:0003680
Vimu1g00476 202 CDD DUF296 71 189 IPR005175 -
Vimu1g00476 202 MobiDBLite consensus disorder prediction 1 62 - -
Vimu1g00476 202 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00476 Vimu-Chr1 2885486 2886094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00476 43 197 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.032 8.65e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00476 - - var:108336502 303.523