Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00472 ATGATTTGCACGGTGAAACAGCCCGCCATATCGATCGGAGCCTCTGATGTTTTGCTACGGAAAAAGGGTTCAACTTTAGCCCCAGCTCAGTCATGTTCCCTTGTTGTCCCTTCTTCCCACCCAAGGGAAAAGATTGTGAGATCTCTTTTGTCAGTGCAAAAGCCACTGCACCTTTCATGTGTGGGGTTGGGGAATTTTGTTAGGTCTCCGGTGAGGCGTGACCGTGGTGATTTGGGGACATGTTGGGCCTATGAGGCTCAGAGACCGGAGGTGGAAGGGGCTGATCCATCAGAGGCTGCTAAGAAGGTGAAAATTGGTTTATACTTTGCAACCTGGTGGGCTCTGAATGTGGTGTTCAATATTTATAACAAGAAGGTGCTGAATGCATTCCCCTACCCTTGGCTTACCTCAACACTCTCCCTTGCATGTGGGTCTCTCATGATGTTGATCTCTTGGGCCACCAGGATAGCCGAGCCTCCTAAGACCGATCTTGAGTTCTGGAAGACTTTGTTACCTGTTGCTGTTGCACATACAATAGGACATGTAGCGGCAACTGTTAGCATGTCAAAAGTTGCAGTATCCTTCACCCACATCATAAAGAGTGGTGAACCAGCTTTCAGTGTTCTTGTTTCCAGATTTCTTCTGGGTGAGACCTTCCCGGTGCCAGTCTATCTGTCCTTAATTCCTATCATTGGTGGATGTGCACTTGCAGCTGTTACTGAGCTAAACTTCAACATGATTGGTTTCATGGGGGCTATGATATCGAATTTGGCATTCGTGTTCCGTAACATATTTTCAAAGAAGGGCATGAAAGGAAAGGCTGTTAGTGGAATGAACTACTATGCGTGTTTATCTATGTTGTCTCTTGTAATACTCACACCTTTTGCGATTGCTGTGGAGGGACCACAGATGTGGGCAGCTGGATGGCAAGCAGCACTCTCTCAAATTGGACCTCAATTTATATGGTGGGTGGCAGCTCAGAGTATATTCTATCACCTGTATAATCAGGTGTCGTACATGTCTCTGGATGAGATATCTCCTTTGACATTTAGCATTGGAAACACCATGAAACGTATATCTGTTATAGTTTCTTCAATCATCATCTTCCACACACCAGTTCAGCCTGTTAACGCTCTTGGAGCTGCTATTGCCATCCTCGGAACCTTCTTGTATTCACAGGTAGTATATCTAGATGGGAGTTTTTCATAG 1209 0.4566 MICTVKQPAISIGASDVLLRKKGSTLAPAQSCSLVVPSSHPREKIVRSLLSVQKPLHLSCVGLGNFVRSPVRRDRGDLGTCWAYEAQRPEVEGADPSEAAKKVKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLISWATRIAEPPKTDLEFWKTLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLIPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKAVSGMNYYACLSMLSLVILTPFAIAVEGPQMWAAGWQAALSQIGPQFIWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFLYSQVVYLDGSFS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00472 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
Vimu1g00472 402 PANTHER SOLUTE CARRIER FAMILY 35 104 394 - -
Vimu1g00472 402 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Vimu1g00472 402 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 394 IPR004696 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00472 Vimu-Chr1 2859344 2861461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00472 34 394 Antiporters AT1G61800 78.415 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00472 K15283 - gmx:100787351 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01074 2 7031579 7032166 Vimu1g00472 1 2859344 2861461 ECH
Vimu1g00472 1 2859344 2861461 Vimu1g00472 1 2859344 2861461 ECH
Vimu2g02916 2 27682906 27686816 Vimu1g00472 1 2859344 2861461 PCT