Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00466 ATGAGTTTCTTTTCATGTTGTACATCATCTGAGAAGATCAACAAGAACTCCTTCAGAGGGAGCAGCAGGGACTTCAATGATGCAAAATCTATGCCATCATGTGGTACCATGTGTTTTAAACCTGATAACAGCAAGAGGAAGTTCATAGAACAAGAAATTGCAAAGATTGGAAGAGGGAATATTACCTCTCAGACTTTTTCTTATCATGAGCTATGTGTTGCAACTGGGAATTTTCACCCTGAGAACATGATTGGTGAAGGAGGCTTTGGAAGGGTGTATAAAGGACGCATTAAAAGCATAAACAAGGTTGTTGCTGTGAAGAAACTTAACAGGAATGGATTCCAAGGAAACAGAGAATTTCTTGTGGAGGTTTTGATTTTGAGTCTCTTGCACCACCCAAACCTTGTTAATTTGGTAGGGTATTGTGCAGATGGTGAACAAAGGATTTTGGTATACGAATACATGGTGAATGGTTCTTTAGAAGATCACCTTCTTGACAGAAGGAAATTTACATTAATGGCTGATCCATTGCTGGAAGGGAACTACCCAGCAAAGGGTCTACACCAAGCACTAGCAGTTGCAGCAATGTGCCTTCAGGAGGAAGCACATACTCGACCTTTGATCAGTGACGTGGTTACAGCCATTGATGTTTTAGCCAAGACGCAGATGCAAGTGGGAAAACAGCAACATGCAACAGACACTTTTTTGGAGGACAAAGAACGCAGTTAA 729 0.4115 MSFFSCCTSSEKINKNSFRGSSRDFNDAKSMPSCGTMCFKPDNSKRKFIEQEIAKIGRGNITSQTFSYHELCVATGNFHPENMIGEGGFGRVYKGRIKSINKVVAVKKLNRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCADGEQRILVYEYMVNGSLEDHLLDRRKFTLMADPLLEGNYPAKGLHQALAVAAMCLQEEAHTRPLISDVVTAIDVLAKTQMQVGKQQHATDTFLEDKERS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00466 242 ProSiteProfiles Protein kinase domain profile. 78 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00466 242 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Vimu1g00466 242 PANTHER OS07G0668900 PROTEIN 166 226 - -
Vimu1g00466 242 Pfam Protein tyrosine and serine/threonine kinase 81 172 IPR001245 GO:0004672|GO:0006468
Vimu1g00466 242 Gene3D Phosphorylase Kinase; domain 1 63 154 - -
Vimu1g00466 242 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Vimu1g00466 242 SUPERFAMILY Protein kinase-like (PK-like) 59 169 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00466 Vimu-Chr1 2826146 2828395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00466 169 219 Glycoside Hydrolase AT3G07070 64.706 1.52e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu1g00466 PK_Tyr_Ser-Thr 9.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00466 - - gmx:100798032 295.819