Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00462 ATGGATCTTCTTTGGTTGGGTTTTCTCTTCTTCATCCCAATCCTTCTTCTGCTGAGAAGAGGAAGAAACCCCTCTAAAAGGGTTCCTCCTGGTTCACTTGGAATACCTATTATTGGCCAAAGTCTTGGCCTTCTTCGAGCTATGCGTGCCAACACCGCAGAAAAATGGGTTCAAGAAAGAATCAGCAAGTATGGTCCCATTTCAAAGCTAAGCCTATTCGGAAAACCAACAGTATTAATCTATGGACAGGCTGCAAATAAGTTTATATTCTCTAGTGGCGGCAACGCAATTGCTAACCAGCAAACACAATCCATCAAAATGATCCTAGGTGACCGGACCTTGCTGGAACTGTGTGGTGAAGATCACAGCCGTGTCAGAGGTGCCCTTGTCTCATTTTTGAAGCCAGAGTCCTTGAAGAGATATGTGGGAAAAATGGATGAAGAAATCAGGAATCACCTTCAGATGCATTGGCAGGGGAAACAGCAACTCAAGGTATTGCCTCTGATGAAGACTCTCACGTTCAATATAATTTGCTCTCTTTTGTTTGGTCTTGAGCGTGGAAAACAGAGAGATCAATTCCTGGATTCCTTCCAAGAGATGATAGAAGGAATGTGGTCAGTCCCAATTAACGTGCCCTTCACACGTTACAATCGTAGCCTTAGAGCAAGTGCAAGAATCCAGACCATGCTGAAGGAGACTGTGCAGAAGAAGAGGACTGAACTCGAGCAAAATGCAGCATCTGCACGCCAAGACTTGATTAGTTGCTTGTTAGGCATGGTTGATGAAGATGGCAAACAAGTTATGACTGAGAAGGAAATCATTGACAACATCAAGCTTGTCATGGTTGCTGGACACGACACTTCATCTGTTCTAATCACTTTCATCATCCGACTCTTAGCCAACGAACCTGCTATCTATGCAACAGTTCTTCAAGAACAGGAAGAGATAGCAAAAGGCAAGCCCTCTGGAGAGGCACTCACATGGGAAGACCTTTCAAAGATGAAGTACACATGGAGAGTAGCAATGGAAACTCTTAGAATGTTTCCTCCTATTTTTGGTGGCTTCAGAAAGGCTGCAACAGATATTGAATACGATGGATACCTCATACCCAAAGGATGGCAGATTTTCTGGGTCACAGCAATGACTCACATGGATAGCAGCATTTTCTCAGAACCATTGAAGTTTGAGCCTAGTAGATTTGAAAACCAAGCATCTGTACCACCCTACTGCTTCATTCCATTTGGTGGGGGAACAAGAATATGTCCAGGATATGAGTTTTCCAGGCTTGAAACTCTAGTTACAATTCATTACCTAGTGACCCGATTCAGTTGGAAGCTATGTTCAGACAATTTCTTCAATAGGGATCCAATGCCAGTACCATCTCAAGGGCTACTGATTCAAATTTGGCCAAGGAGACTTTCTTAA 1425 0.4344 MDLLWLGFLFFIPILLLLRRGRNPSKRVPPGSLGIPIIGQSLGLLRAMRANTAEKWVQERISKYGPISKLSLFGKPTVLIYGQAANKFIFSSGGNAIANQQTQSIKMILGDRTLLELCGEDHSRVRGALVSFLKPESLKRYVGKMDEEIRNHLQMHWQGKQQLKVLPLMKTLTFNIICSLLFGLERGKQRDQFLDSFQEMIEGMWSVPINVPFTRYNRSLRASARIQTMLKETVQKKRTELEQNAASARQDLISCLLGMVDEDGKQVMTEKEIIDNIKLVMVAGHDTSSVLITFIIRLLANEPAIYATVLQEQEEIAKGKPSGEALTWEDLSKMKYTWRVAMETLRMFPPIFGGFRKAATDIEYDGYLIPKGWQIFWVTAMTHMDSSIFSEPLKFEPSRFENQASVPPYCFIPFGGGTRICPGYEFSRLETLVTIHYLVTRFSWKLCSDNFFNRDPMPVPSQGLLIQIWPRRLS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00462 474 CDD CYP90-like 60 470 - -
Vimu1g00462 474 PRINTS P450 superfamily signature 339 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS P450 superfamily signature 283 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS P450 superfamily signature 421 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS P450 superfamily signature 412 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 FunFam Taxadiene 5-alpha hydroxylase 19 471 - -
Vimu1g00462 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 414 423 IPR017972 GO:0005506|GO:0016705
Vimu1g00462 474 PANTHER CYTOCHROME P450 26 26 459 - -
Vimu1g00462 474 SUPERFAMILY Cytochrome P450 25 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 Gene3D Cytochrome P450 20 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 Pfam Cytochrome P450 29 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 Coils Coil 231 251 - -
Vimu1g00462 474 PRINTS E-class P450 group I signature 378 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS E-class P450 group I signature 421 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS E-class P450 group I signature 411 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS E-class P450 group I signature 272 289 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00462 474 PRINTS E-class P450 group I signature 292 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00462 Vimu-Chr1 2805917 2808154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00462 8 444 Cytochrome P450 AT4G19230 32.037 4.76e-75 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00462 - - gmx:100790001 856.67