Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00456 ATGGGTTGTTGTCTGAGTAAAAAAGGGCCAGGGCCAGAAGAACACATTGGTTACAGAAATGCTGTTGGGGGAGCCCACAATCACAAGAGCCATGAACCCTTTGTCAGCCAATTTCCTGAGAAACATGCTCCTCAGGCTGCTTGGAGGGCCACTGTTCCTTCTCCAGGCCCAAAACATGTTCACAGGGCTGACACAATCACTGGGAAGCCATTTGAGGATGTTAAGCAGCACTATACTCTTGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATCTCTGCACTGAAAATTCAACTGGTTTGCAATATGCCTGCAAGTCCATCTCAAAGAGGAAGCTTGTGAGAAGAGATGACAAGGAGGATATGAGGAGGGAGATTCAAATTATGCAGCATTTAAGTGGACAATCCAACATTGTGGAGTTCAAAGGTTCTTATGAGGATAAGAACTCTGTTCATGTGGTCATGGAACTGTGTGCAGGTGGTGAACTTTTTGATAGGATCATTGCGAAGGGGCACTACAGTGAAAGGGCTGCTGCTGCAGTGTGTAGACAGATTGTTAAAGTTGTTAACATCTGCCATTTTATGGGAGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCCAGTAAGGATGATAAGGGACTTCTAAAGGCCACAGATTTTGGTTTATCGGTCTTCATAGAAGAAGGAAAGGTGTATCGGGACATAGTTGGCAGTGCTTACTATGTTGCTCCAGAAGTTCTTAATCGTAGCTATGGGAAGGAAGCAGATATATGGAGTGCAGGAGTAATGCTGTATATCTTACTTAGTGGTGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATTCCATATTGAAGGGTTATATTGATTTTGAAAGCAATCCATGGCCAAACATATCAAGCAGTGCGAAGGACCTTGTTCGCAAAATGCTTACAAAGGATCCAAAGAAACGAATTACTTCAGCTCAGGTTCTAGAGCATCCCTGGCTTAGAGAAGGTGGCAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCAATGAACAAACTAAAAAAACTAGCCCTCAAGGTCATCGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTCTGAAGGCAATGTTCACAAATATGGACACTGACAATAGTGGTACAATAACCTATGAGGAACTGAGGGCAGGATTGCAAAGACTTGGCTCAAAGCTAACTGAAGCTGAAGTGAGACAACTTATGGATGCCGCCGATGTAGACGGAAATGGAACAATTGATTACATAGAATTCATCACTGCTACAATGCACAGATACAGGTTGGAGAGAGATGAGCATCTGTATGGGGCCTTCCAATATTTTGACAAAGACGGGAGCGGATATATCACAAGAGATGAACTGGAAACAGCCATGAAGGAGAATGGTATGGGAGACGAGGCCACAATCAGGGAAATTATATCAGAAGTTGACACTGATAATGATGGTAGAATCAACTATGACGAATTTTGTACAATGATGAGGAGTGGAACCCAAAAGGGAAAGCTATTCTAA 1578 0.4322 MGCCLSKKGPGPEEHIGYRNAVGGAHNHKSHEPFVSQFPEKHAPQAAWRATVPSPGPKHVHRADTITGKPFEDVKQHYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVRRDDKEDMRREIQIMQHLSGQSNIVEFKGSYEDKNSVHVVMELCAGGELFDRIIAKGHYSERAAAAVCRQIVKVVNICHFMGVMHRDLKPENFLLSSKDDKGLLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLNRSYGKEADIWSAGVMLYILLSGVPPFWAETEKGIFDSILKGYIDFESNPWPNISSSAKDLVRKMLTKDPKKRITSAQVLEHPWLREGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDNSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRYRLERDEHLYGAFQYFDKDGSGYITRDELETAMKENGMGDEATIREIISEVDTDNDGRINYDEFCTMMRSGTQKGKLF 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00456 525 SUPERFAMILY EF-hand 375 515 IPR011992 -
Vimu1g00456 525 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vimu1g00456 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vimu1g00456 525 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Vimu1g00456 525 CDD STKc_CAMK 77 335 - -
Vimu1g00456 525 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00456 525 FunFam Calcium-dependent protein kinase 1 80 163 - -
Vimu1g00456 525 Pfam Protein kinase domain 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00456 525 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Vimu1g00456 525 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Vimu1g00456 525 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Vimu1g00456 525 Gene3D Transferase(Phosphotransferase) domain 1 164 343 - -
Vimu1g00456 525 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Vimu1g00456 525 SUPERFAMILY Protein kinase-like (PK-like) 76 343 IPR011009 -
Vimu1g00456 525 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Vimu1g00456 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 511 - -
Vimu1g00456 525 FunFam Calcium-dependent protein kinase 1 344 519 - -
Vimu1g00456 525 Gene3D - 344 520 - -
Vimu1g00456 525 SMART efh_1 383 411 IPR002048 GO:0005509
Vimu1g00456 525 SMART efh_1 419 447 IPR002048 GO:0005509
Vimu1g00456 525 SMART efh_1 455 483 IPR002048 GO:0005509
Vimu1g00456 525 SMART efh_1 490 518 IPR002048 GO:0005509
Vimu1g00456 525 ProSiteProfiles EF-hand calcium-binding domain profile. 487 521 IPR002048 GO:0005509
Vimu1g00456 525 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00456 525 FunFam calcium-dependent protein kinase 1 164 343 - -
Vimu1g00456 525 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Vimu1g00456 525 Pfam EF-hand domain pair 384 444 IPR002048 GO:0005509
Vimu1g00456 525 Pfam EF-hand domain pair 454 516 IPR002048 GO:0005509
Vimu1g00456 525 Coils Coil 401 421 - -
Vimu1g00456 525 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00456 Vimu-Chr1 2764615 2767219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00456 35 525 EF-hand Containing Proteins AT3G20410 75.828 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu1g00456 Pkinase 5.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00456 K13412 - gmx:100794852 939.873