Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00455 ATGCCCATTACAAACACTTCTCTCACTGTCACCGACTGCTTTTCTGAAATGGTAGAAACAGTAACCGCAAGTTTCAAGCATCGTTGTAATGGTGGTTCTGCAGTTGGGCTATTCATGAAGGCTTTCGAGAGAGTTCTTTTTGCCTTATTTACTTGCATTGTGGCACTTGGAGGGTCAATAGTGGGAACAATTGCAGGAGGCATAAAAGGGCAGACCACAGAAACTGGTTTTCTTGATGGTGCTGGCAAAGGAGCAATCACAGGAGCCATTGCAGCATTGGAATTGATAAATTTTGACTCTGCTGCTGATGAGCCAGTGTCTAAGTTTGCCCTGTTGAGAAGTTTGTTGAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTGGCAAAACTCTATCAGTTGCATGTAACAATTAGCACACTGGAAACAATATACCAAGAAGTATCAGACATCTATGATATCAGGGGAGCAAGAGGGGTACCCCAGAATGCGATTATGAAGCTTCAATTTCAGCCATTCAACTCTGGAAAAATGTCCAAGTTATATAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTCGAGGATGGAGAATTGGTGAGGATACTTCCAAAATGTGGCCACCTTTTTCACCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGTCCAATGTGCAGAACTTATGTTCCAGACCACATTCTTTAA 717 0.424 MPITNTSLTVTDCFSEMVETVTASFKHRCNGGSAVGLFMKAFERVLFALFTCIVALGGSIVGTIAGGIKGQTTETGFLDGAGKGAITGAIAALELINFDSAADEPVSKFALLRSLLNGKVFMEWICPAVAKLYQLHVTISTLETIYQEVSDIYDIRGARGVPQNAIMKLQFQPFNSGKMSKLYNMSCCSICFQDFEDGELVRILPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHIL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00455 238 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
Vimu1g00455 238 SMART ring_2 188 229 IPR001841 -
Vimu1g00455 238 SUPERFAMILY RING/U-box 187 234 - -
Vimu1g00455 238 CDD RING-H2_EL5-like 187 230 - -
Vimu1g00455 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 236 IPR013083 -
Vimu1g00455 238 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 32 231 IPR044523 -
Vimu1g00455 238 Pfam Ring finger domain 188 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00455 Vimu-Chr1 2753122 2754778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00455 48 233 C3H Transcription Factor Family AT5G66070 37.688 1.73e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00455 - K19041 gmx:100305612 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02543 2 21532788 21534152 Vimu1g00455 1 2753122 2754778 PCT