Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00448 ATGAGCGGAGTGGGGATTGATATTGGAAATGAGAATTGTGTGATTGCTGCAGTGAAGCAAGGAGGGGTTGATGTTTTATTGAATGATGAATCCGAACGTGAAACCCCTGCTGTGGTTTGCTTTGGAGAGAAGCAAAGGTTTTTAGGGTCAGCAGGTGCTGCTTCTGCCATGATGCACCCCAAGTCCGCAATATCTCAAGTGAAGAGACTAATAGGCAGGAGATTTGCAGACCCTGATGTTCAAAATGAGTTGAAAATGCTCCCTGTTGAAACCTCGGAAAGTGTAGATGGTGGCATTCTGATACACTTGGAATACTTAAAGGAGAGTCATGCGTTTACCCCGGTTCAAATAGTAGCAATGCTCTTTGCGCACTTGAAGACCATAGCAGAAAAAAAATTTGGGACCACCGTTTCTGACTGTGTTATTGGGGTTCCATCATACTTCACCATCTTGCAGAGACAAGCTTATCTCAACGCAGCAGAAATTGTTGGATTGAAGCCTTTGAGGTTGATCCATGATTGCACTGCAACTGCTCTTAGTTATGGAGTTTATAAAACAGATTTTCCTAGTGAAGCTCCTGTTTATGTTGCATTTGTTGACATAGGCAATTGTGATACTGAGGTCTGTATTGCAGCATTTCAGGCTGGTCAAATGAAGATACTCTCACATGCTTATGACATGAGCTTAGGGGGGAGAGACTTTGACGAGGTTCTGTTTAGTCATTTTGCAGCAAAATTTAAAGAACAATACAATATTGAAGTGTATTCTAACGACAGGGCATGTAGGAGGCTGCATGTGGCATGTGAGAATTTGAAGAAGATTTTGAGTGCAAATCTAGAGGCTGATCTTAGCGTTGAGTGTTTGATGGATGAAAAAGATGTTAAAGGATACATCAAGAGGGAAGAATTTGAGAATCTGGCATCAGGACTGTTGGAGAGAATTTCTGTTCCTTGCAAGAAAGCATTGGCTGATGCAGCCTTGACGGTAGAAAAGATTAGTTCCGTTGAGTTAGTTGGTTCAGGTTCACGGATTCCAGCTATAACTAGAATATTAAGTTCTCTATTTAAGAGAGAGCTCAGCCGCAGACTGAATGCGAGTGAGTGTGTAGCTCGTGGTTGTGCTCTCCAGTGTGCAATGCTGAGTCCTGTTTTCCTTGTCAAAGAATATGAGGTCCAGGATGCTATTCCTTTTTCCATTGGACTTTCATCTGATGGAAAGGCAATTCGTGCAGGATTGCATGGTGGTGTACTCTTCCCAAAAGGCCAACCCATTCCAAGTGTTAAAATTCTCACATTTGAGTACAGTGATTTGCTCCATTTGGAAGCATTCTATGCCAATCCAGATGAATTACCACCCGGGGCATATCCTAAAATTTGTTGCTTCACAATTGGTCCTTTCCATAGATCCCATGCAACCAAGGCAATAATTGAAGTTCAAGTACAACTAAATTTGCATGGCATTATTGGTATTGAATCAGTTACGTTGGTTGAGGATCGTGTGGATGATTCAGGTACAACAGACGATTCTCATTCAAATTCTGAAACAGTCAATATTGCACCTGTTTCTGAGACAATTGAAAATGCCTCAGATGATAGTATCAATAAAAAGTTTGAAGCTTCTCGTCATTCTGCTGATGGTACAAGAAAAGATAAAGCTAACAGAAGGCTTCATGTACCAGTGAGTGAAAACATTTATGGTGCAATGAACAAGGCCGAGATATTGGAAGCTCAAGAAAAAGAACTCCAGTTAGCCGATCAGGACAGAACTACTGAGCTAGTCAAAGACAACAAGAATCTGTTGGAGTCTTATATTTATGAAACAAGGAGTAAGATCTTCAGCACATATCTGAGCTTTTCGAGTGAACATGAGAGGAAGGACGTATCTAGGGGCCTGAAAGAGACCGAGGAATGGCTCTATGATGATGGTGGTGATGAAACTGTAGATACTTATTCTGCAAAACTAAAAGATCTAAAACAGCTGGTGGATCCAATTGAGTATCGATACAAAGACAGAGAAGCAAGACCACAAGCTACAAGAGACTTGTTAAGCTGCATTGTAGAGTATAGAATGTCAGCAGATTCTCTTCCACCCCAAGATAAAGAACTGGTCATAAATGAGTGCAATAAAGCAGAGCAGTGGCTAAGAGAGATGAGGCAGCAACAAGATCTTTACCCTAAAAACTCTGATCCAGTATTAATATCAATTGATATCCAGAGCAAGACAGAGGAGTTAAACTCAGTATGCCAAAAGGTATTGAAATCCAACGGTTCTCCAATTCCAAGAGATGAGGGTACAGACAAACAAAATACCACATGA 2316 0.4115 MSGVGIDIGNENCVIAAVKQGGVDVLLNDESERETPAVVCFGEKQRFLGSAGAASAMMHPKSAISQVKRLIGRRFADPDVQNELKMLPVETSESVDGGILIHLEYLKESHAFTPVQIVAMLFAHLKTIAEKKFGTTVSDCVIGVPSYFTILQRQAYLNAAEIVGLKPLRLIHDCTATALSYGVYKTDFPSEAPVYVAFVDIGNCDTEVCIAAFQAGQMKILSHAYDMSLGGRDFDEVLFSHFAAKFKEQYNIEVYSNDRACRRLHVACENLKKILSANLEADLSVECLMDEKDVKGYIKREEFENLASGLLERISVPCKKALADAALTVEKISSVELVGSGSRIPAITRILSSLFKRELSRRLNASECVARGCALQCAMLSPVFLVKEYEVQDAIPFSIGLSSDGKAIRAGLHGGVLFPKGQPIPSVKILTFEYSDLLHLEAFYANPDELPPGAYPKICCFTIGPFHRSHATKAIIEVQVQLNLHGIIGIESVTLVEDRVDDSGTTDDSHSNSETVNIAPVSETIENASDDSINKKFEASRHSADGTRKDKANRRLHVPVSENIYGAMNKAEILEAQEKELQLADQDRTTELVKDNKNLLESYIYETRSKIFSTYLSFSSEHERKDVSRGLKETEEWLYDDGGDETVDTYSAKLKDLKQLVDPIEYRYKDREARPQATRDLLSCIVEYRMSADSLPPQDKELVINECNKAEQWLREMRQQQDLYPKNSDPVLISIDIQSKTEELNSVCQKVLKSNGSPIPRDEGTDKQNTT 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00448 771 Gene3D - 38 113 - -
Vimu1g00448 771 Gene3D - 568 681 IPR029048 -
Vimu1g00448 771 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Vimu1g00448 771 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 538 IPR029047 -
Vimu1g00448 771 Gene3D - 186 360 - -
Vimu1g00448 771 Pfam Hsp70 protein 4 668 IPR013126 GO:0005524|GO:0140662
Vimu1g00448 771 Gene3D Actin; Chain A, domain 4 230 313 - -
Vimu1g00448 771 FunFam Heat shock 70 kDa protein 4 568 678 - -
Vimu1g00448 771 SUPERFAMILY Actin-like ATPase domain 3 185 IPR043129 -
Vimu1g00448 771 PANTHER HSC70CB, ISOFORM G-RELATED 1 758 - -
Vimu1g00448 771 Gene3D - 5 374 - -
Vimu1g00448 771 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 667 IPR029048 -
Vimu1g00448 771 FunFam Heat shock 70 kDa protein 4 1 73 - -
Vimu1g00448 771 MobiDBLite consensus disorder prediction 500 520 - -
Vimu1g00448 771 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 386 601 IPR029047 -
Vimu1g00448 771 CDD HSPA4_like_NDB 2 381 - -
Vimu1g00448 771 PRINTS 70kDa heat shock protein signature 140 160 - -
Vimu1g00448 771 PRINTS 70kDa heat shock protein signature 388 407 - -
Vimu1g00448 771 PRINTS 70kDa heat shock protein signature 30 42 - -
Vimu1g00448 771 PRINTS 70kDa heat shock protein signature 2 15 - -
Vimu1g00448 771 PRINTS 70kDa heat shock protein signature 332 348 - -
Vimu1g00448 771 PRINTS 70kDa heat shock protein signature 473 489 - -
Vimu1g00448 771 PRINTS 70kDa heat shock protein signature 363 383 - -
Vimu1g00448 771 FunFam Heat shock 70 kDa protein 4 38 113 - -
Vimu1g00448 771 FunFam Heat shock 70 kDa protein 4 109 197 - -
Vimu1g00448 771 FunFam Heat shock 70 kDa protein 4 230 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00448 Vimu-Chr1 2715421 2721036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00448 4 436 Calmodulin-binding Proteins AT1G16030 32.494 1.70e-72 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00448 K09489 - gmx:100795914 1269.22