Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00446 ATGAGAAGACCAAAATCGAAGGAGCTTCGGAAGCAACAGAGACTCTCAGAGCAGGAAGAGATAAACCTGTTGAATTCATGGATCCAGTTTCAGCCACCGGACTCCGGCTCCAACCCAATGTCGCTCCCACCACTGCCCAAAAACTCCTCCGTTGGTCTCCTCGAAGGCAACACCTATTCGCGCTACGCTGGCGCGTCCCGCTTTGATCAATTCCCGCTTTCCAAGAAAACAAAGGACGCCCTACGGGAAGCCAAGTTCGTTGTCACAACCGACATCCAGAGGGCTGCTCTCCCCCACGCGCTCTATGGCCGAGACATCCTCGGCGCCGCCAAAACTGGGTCCGGTAAAACCCTCACTTTCATTATCCCTGTGTTGGAGAAGTTGTATAGAGAGAGGTGGGGACCTGAAGATGGCGTTGGCAGCATCATCATATCTCCTACAAGGGAATTGGCTGGTCAGATATTTGATGTGTTGAAGGATGTTGGAAAACACCATAACTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGATGTTGACATGGAGAAAGAACGTGTTAATGAGCTCAATATATTGATCTGCACACCTGGTAGACTGCTTCAACACATGGATGAAACTCCCAATTTTGATTGTTCACAAATGCAGATTTTGGTGCTAGACGAGGCTGATCGCATTCTAGACAGTGGGTTCAAAAAGGAACTAAATGCAATCATTTCTCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCCAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCATGAAGAATCAGTGACAGCCACTCCTTCTCTGTTGAAGCAAATTGTGATGATTGTAGCTCCTCTTTTCTTTCCTGTTAAAGAAGTTCCTTTTCCTGAAGGGAATCATGTTGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATTCCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTTGATTGCCCCGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACAGCTCGATATAAATCTGGTGGAAAGTCAGTTTTATTTCTGTTGCCTTCTGAAATGCAAATGCTTGAAAAGTTAAAAGCAGCCAAGGTTCCAGTGCATTTTACTAAGCCAAGGCAAGAACGATTACAACCAGTTTCTTCTCTGTTGGCGTCTTTACTGGTTAAATATCCAGACCTGCAGCATCGGGCTCAGAGGGCGTTCATCACATATTTGAGATCCATCCATATACAAAAGGATAAAGACATATTTGATGTTATGAAACTGCCTATTAACGAGTATTCGGCATCATTAGGTTTACCAATGACTCCAAAAGTCCGATTTCTTAACCAGAAAATTAAATCTAAAGCTGTGTCAACAAAATCAGTTTTAGTTGAACCAGAAGAATCAAGTGAGAAAAATGTCTTGGAGGTTTCTAGAAACAAGATAGACACAGATCCTTTCAAGGATGAAGAAATCGAAAATGATCTTTTTCAGTTAGCAGATCCTGCAAATGAAGACAAAGTGAAGTCATCTGAAATTGAAGAAATAATACCAGCAACTCGTGTATTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGGCCAGTGGGGACCAGGGTTGTCTTTGATGATGAAGGCAACACACTTCCTCCGTTAGCCAGGATAGCTGACACACAAAGTGGCAAAGAAGCGTTGCTACTTGACCAAGAACAAAAGGCTGAATACTATAGAAGGATGCGCGATGATTTGAAGAAGGCTGACAAGGAAGACAAGCTTATAGAGCGTCAGCGGCTTAGAGAAAAAAGAATAAAGCAGAAGATGAAATGGAAAGGTGGGAATGAGGAAGAGGAGGACCAAGATGATAATTCTGGGTCAGAAAGAGACGAAACTGTTAATAGACGGCACAAAAAGAATAAAGTATACTTTGATAGTGACAGTGATGAGGGTGAAAAAAATGAAATCGCAGGGAATGCACGTACAAGTTCGACTGCGGTTACTTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCTATGCACTCATAG 2205 0.4286 MRRPKSKELRKQQRLSEQEEINLLNSWIQFQPPDSGSNPMSLPPLPKNSSVGLLEGNTYSRYAGASRFDQFPLSKKTKDALREAKFVVTTDIQRAALPHALYGRDILGAAKTGSGKTLTFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKDVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQILVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPSLLKQIVMIVAPLFFPVKEVPFPEGNHVVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEMQMLEKLKAAKVPVHFTKPRQERLQPVSSLLASLLVKYPDLQHRAQRAFITYLRSIHIQKDKDIFDVMKLPINEYSASLGLPMTPKVRFLNQKIKSKAVSTKSVLVEPEESSEKNVLEVSRNKIDTDPFKDEEIENDLFQLADPANEDKVKSSEIEEIIPATRVLKKKKLKINVHRPVGTRVVFDDEGNTLPPLARIADTQSGKEALLLDQEQKAEYYRRMRDDLKKADKEDKLIERQRLREKRIKQKMKWKGGNEEEEDQDDNSGSERDETVNRRHKKNKVYFDSDSDEGEKNEIAGNARTSSTAVTLEEQEALALKLLNSMHS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00446 734 Coils Coil 718 734 - -
Vimu1g00446 734 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Vimu1g00446 734 Pfam Domain of unknown function (DUF4217) 439 496 IPR025313 -
Vimu1g00446 734 SMART DUF4217_3 435 498 IPR025313 -
Vimu1g00446 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 274 IPR027417 -
Vimu1g00446 734 SMART helicmild6 313 396 IPR001650 -
Vimu1g00446 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 285 444 IPR001650 -
Vimu1g00446 734 Gene3D - 54 278 IPR027417 -
Vimu1g00446 734 Pfam Helicase conserved C-terminal domain 317 395 IPR001650 -
Vimu1g00446 734 PANTHER RNA HELICASE 65 555 - -
Vimu1g00446 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 419 IPR027417 -
Vimu1g00446 734 MobiDBLite consensus disorder prediction 655 716 - -
Vimu1g00446 734 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Vimu1g00446 734 CDD DEADc_DDX10 77 275 - -
Vimu1g00446 734 MobiDBLite consensus disorder prediction 676 705 - -
Vimu1g00446 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Vimu1g00446 734 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Vimu1g00446 734 Gene3D - 305 516 IPR027417 -
Vimu1g00446 734 SMART ultradead3 85 289 IPR014001 -
Vimu1g00446 734 CDD SF2_C_DEAD 312 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00446 Vimu-Chr1 2706352 2710521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00446 93 417 Eukaryotic Initiation Factors Gene Family AT3G19760 29.240 6.55e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00446 K14776 - gmx:100792106 1246.49