Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00444 ATGGTTGAAGTGGGTATTTTTCAGATAACAAGTAACAGTTTCGACCCATTTGCTGAGGCTAAAGATAGAGATGCCCCCGGGGCGAAGGAGTATGTGCATATTCGTATACAGCAGAGGAATGGGAAGAAGAGTTTGACGACAGTGCAAGGTCTGAGGAAAGAGTTCAGCTATGAGAAGATTCTGAAAGACCTGAAGAAAGAGTTCTGCTGCAATGGCAATGTTGTGCATGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGTGATCAGCGCAAAAACGTTTCTCACTTCCTCATTCAGGCTGCACTTGTTAGGAAGGACCAGATCAAGATTCATGGTTTTTGA 345 0.4435 MVEVGIFQITSNSFDPFAEAKDRDAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVHDKELGKIIQLQGDQRKNVSHFLIQAALVRKDQIKIHGF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00444 114 SUPERFAMILY eIF1-like 9 114 IPR036877 GO:0003743|GO:0006413
Vimu1g00444 114 CDD eIF1_SUI1 30 113 IPR005874 GO:0003743
Vimu1g00444 114 ProSiteProfiles Translation initiation factor SUI1 family profile. 32 102 IPR001950 GO:0003743|GO:0006413
Vimu1g00444 114 Pfam Translation initiation factor SUI1 29 101 IPR001950 GO:0003743|GO:0006413
Vimu1g00444 114 FunFam Eukaryotic translation initiation factor SUI1 4 114 - -
Vimu1g00444 114 NCBIfam translation initiation factor SUI1 12 114 IPR005874 GO:0003743
Vimu1g00444 114 PIRSF Transl_init_SUI1_Euk 3 114 IPR005874 GO:0003743
Vimu1g00444 114 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 12 114 - -
Vimu1g00444 114 Gene3D - 5 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00444 Vimu-Chr1 2699806 2705443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00444 1 114 Eukaryotic Initiation Factors Gene Family AT5G54940 79.825 7.08e-63 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00444 K03113 - gmx:100499676 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00444 1 2699806 2705443 Vimu1g00444 1 2699806 2705443 ECH
Vimu2g02541 2 21475944 21476969 Vimu1g00444 1 2699806 2705443 PCT