Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00443 ATTGATAAATTGCAATCTACTTTTCGCCAATGGGAAAAAGCTGCTGCTGATGGCGACCGATCCAATCTTTCAAAGGAAGTTCTTACTAGCTGTGAAAGCATTGATTGGCAGGTAGATGAATTGGACAAAGCAATTTCTGTGGCCTCTAGAGATCCTTCTTTGTATGGCATTGATGAAGTGGAGCTTGAGAACAGGAGGAGGTGGACCAGTGATGCTCGTAGCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCAGGAACACGCTCAAATATAGCAAACAATGCTAATCTAAATGGGATGCGCAGGGAATTAATGAGGCTTACTAATTCTCAGCAATCTGCGTCTGACCCATATGCTACCCAGGATAACGACGATTTCATAGAATCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGGCAGGATGAGGAGTTGGACGAACTCAGTATAAGTGTACAAAGAATTGGAGATGTTGGACTTACTATACATGACGAGCTCGTTGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATCTTGGGTTTGCTGGCTCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG 684 0.4298 IDKLQSTFRQWEKAAADGDRSNLSKEVLTSCESIDWQVDELDKAISVASRDPSLYGIDEVELENRRRWTSDARSQVSTAKKAVEAGTRSNIANNANLNGMRRELMRLTNSQQSASDPYATQDNDDFIESESDRQMLLIKRQDEELDELSISVQRIGDVGLTIHDELVAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00443 227 SUPERFAMILY SNARE fusion complex 133 197 - -
Vimu1g00443 227 Gene3D - 1 86 - -
Vimu1g00443 227 Pfam Syntaxin 6, N-terminal 1 80 IPR015260 GO:0016020|GO:0048193
Vimu1g00443 227 SMART tSNARE_6 130 197 IPR000727 -
Vimu1g00443 227 FunFam syntaxin-61 isoform X1 138 199 - -
Vimu1g00443 227 Gene3D - 142 206 - -
Vimu1g00443 227 CDD SNARE_NTD_AtSYP61-like 1 84 - -
Vimu1g00443 227 CDD SNARE_Qc 138 195 - -
Vimu1g00443 227 SUPERFAMILY t-snare proteins 1 83 IPR010989 GO:0016020|GO:0016192
Vimu1g00443 227 Pfam SNARE domain 172 223 IPR000727 -
Vimu1g00443 227 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 135 197 IPR000727 -
Vimu1g00443 227 PANTHER SYNTAXIN 21 219 IPR045242 -
Vimu1g00443 227 Coils Coil 173 193 - -
Vimu1g00443 227 FunFam Syntaxin 10 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00443 Vimu-Chr1 2695750 2699398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00443 35 227 SNARE and Associated Proteins AT1G28490 68.557 2.50e-88 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00443 K08500 - gmx:100793612 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02527 2 21246066 21249329 Vimu1g00443 1 2695750 2699398 PCT