Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00437 ATGATGATATCTGGTAGATGTGCAGCTTGCAAGAATCAAAGAAGAAGATGTCCTTCAGATTGCATTTTCTCTCCATACTTTCCTGCCAATGATCCTCAAAGATTTGCTTCTGTTCACAAAATCTATGGTGGCAGTAATGTTGGGAAAATGCTTCAGCAAATTCCACCATATTTACGTGAACAAACTGCAAATTGTTTATACTTTGAAGCACAATGTAGGATTCAAGATCCAGTTTATGGATGTGTTGGGATTATCTCAAAACTGTATGAGCAAATCCGCAATGCAGAAATTGAACTTGCTCAAATTCAAACTCAGATTACATGTCACAAGCTTCAACTCCTCCACCCAAATAATGCAGAAACAAACTTCAACTTGTTGCCAACAGTTCAAGCTCAATCCAGTTTTCAAATACCAGCAGAAAGCACCAACCCTCCACAGTTTCCTTGGTTTAATTAA 456 0.3794 MMISGRCAACKNQRRRCPSDCIFSPYFPANDPQRFASVHKIYGGSNVGKMLQQIPPYLREQTANCLYFEAQCRIQDPVYGCVGIISKLYEQIRNAEIELAQIQTQITCHKLQLLHPNNAETNFNLLPTVQAQSSFQIPAESTNPPQFPWFN 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00437 151 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 119 - -
Vimu1g00437 151 Coils Coil 85 112 - -
Vimu1g00437 151 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vimu1g00437 151 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00437 Vimu-Chr1 2670116 2671539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00437 6 120 AS2 family AT3G26660 56.522 7.27e-45 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g00437 LOB 5.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00437 - - ccaj:109810657 224.172