Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00423 ATGGCGAATTTGCCACAATCAATCTCAATGAGTGGTGCGTCCTTTGGAGCTTCTTCTGTCTCTGCGACGAAGGATCGAAGAATGGCGTCTGTGGAACATCTCGTCCTCGAACTCAGCAATCCTGATCTCCGAGAAAACGCACTCCATGAACTCTCCAAGAAGAGAGAGTTGTTTCAGGATCTTGCTCCATTACTGTGGAATTCTTTTGGTACTATGGCAGCACTTTTGCAGGATATGTTATATTTTTATTCTCTTATTTTCTTCCAGGAAATAGTTTCAATATACCCTGTTATTTCACCGCCAAACCTTACTCCAGCACAATCAAACCGAGTCTGCAATGCTCTTGCCCTTCTTCAGTGTGTGGCGTCTCACCTTGATACAAGGATGCAATTCCTCAACGCTCATATACCTCTTTATCTGTATCCCTTCCTTAATACAACAAGTAAGTCCAGGCCATTTGAGTATTTGAGGCTTACCAGTCTAGGAGTCATTGGTGCCTTGGTAAAGGTTGATGATACAGAAGTTATAAGTTTTCTTCTTTCAACAGAGATTATTCCGCTGTGCTTGCGCAGTATGGAAATGGGCAGTGAATTATCAAAAACGGAAAATTTGTGTATAATGAAAGCTCCGTTACCACAGGTTGCAACCTTTATAGTCCAAAAAATTCTGCTGGACGAAATTGGTTTGAAATATATTTGCACTACAGCAGAGCGCTTTTATGCAGTAGGTCGAGTTTTGGGAAACATGGTGGCAACTCTTGTTGAGCAACCGTCATGCCGTCTTTTGAAGCATATTATTCGTTGCTATCTTCGCCTGTCAGATAACCAGAGTGCTTGCGAGGCTTTAAGAACCTGTCTCCCAGACATGTTAAGAGACGCTACATTCAGTAGTTGCCTTCGTGAGGACCCAACAGCAAGGCGGTGGCTACAGCAATTGCTTCACAATATCGGAGTCAATCGAGTTCCTGCACTTCAAGGTGGAGGAGGATTTGATCATATGATGGTGTCGTGA 1011 0.4332 MANLPQSISMSGASFGASSVSATKDRRMASVEHLVLELSNPDLRENALHELSKKRELFQDLAPLLWNSFGTMAALLQDMLYFYSLIFFQEIVSIYPVISPPNLTPAQSNRVCNALALLQCVASHLDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRSMEMGSELSKTENLCIMKAPLPQVATFIVQKILLDEIGLKYICTTAERFYAVGRVLGNMVATLVEQPSCRLLKHIIRCYLRLSDNQSACEALRTCLPDMLRDATFSSCLREDPTARRWLQQLLHNIGVNRVPALQGGGGFDHMMVS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00423 336 PANTHER UNCHARACTERIZED 24 319 IPR007216 GO:0006402|GO:0030014
Vimu1g00423 336 Pfam Cell differentiation family, Rcd1-like 86 316 - -
Vimu1g00423 336 Gene3D - 23 317 IPR011989 -
Vimu1g00423 336 FunFam Cell differentiation protein RCD1 24 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00423 Vimu-Chr1 2560937 2567584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vimu1g00423 Rcd1 1.3e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00423 K12606 - gmx:100801266 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02502 2 20997696 21006018 Vimu1g00423 1 2560937 2567584 PCT