Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu1g00417 | ATGGTTGAAGCCGTGACAATTGAAGAAAGGCCAAAGCACAGAGATATTAGACGTTATTTCTGCCAGTACTGCGGTATCTGCAGATCCAAGAAAACCCTAATTGCCTCTCACATCAATTCGCAACACAAGGAAGAGGATGAGAAGGCTAGAAAAGAAACAGATCCCGAAACAGAGTCTTCAAAATCCAACACCTGCGAAGAATGTGGTGTCACTTTCAAGAAACACGCATATTTGTTGCAGCACATGCAAAGTCACTCGTTTGAGCATTGGATCCCAGACAACGAACTCCAAAATGCACGAGGCAACGAGTTTAGACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAGTCACGCTCTTTGAATTTGAGGTTGGCAAGGCCTTTTGTGTGTACTGTTGATGATTGTCATGCGAGTTACCGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAAGGGAAGACATTTAAGTGCCCTTTTGTGAACTGCAACATTGAGTTCTCTTTGCAAGGCAATATGAAAAGACACGTTGAGGAGATTCACGATGGCAGTTCCACTGCCGCCGCTGACAAAAGTCACAAGCAACATGTCTGTCCAGAGATTGGCTGTGGAAAGGTTTTCGAATTTCCTTCAAAGCTAAAAAAGCATGAAGATTCTCATGTTAAGCTGGACTCAATAGAGGTGGTGTGCTTAGAACCTGGTTGCATGAAGCATTTTGCTAATGTCCAGGGCCTTAGAGCTCATGTAAATTCCTGCCATCAATATATGACCTGTGACATTTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAACCTGACAGCAGTTCCTCGGAGACCTTTCCGTGCGAGTTTAAGGGTTGTAGCTGCACATTCTCTAAAAAATCTAATCTTGATAAGCATAAGAAGGCCGTGCACCTTAAAGTAAAACCTTTTCGGTGTGGGTATCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGCTAAACATGTTTTTACCCTCGGTGATTTTGAAGAAGCTGATGCAGAGTTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAGAATGTCCTACTATTGAAATGTTAATCAGGAAGAGGGTTACCCCACCCAGTAAATTGGAGGATTGGTTATTTATGCAGGACAGAGAGTAG | 1224 | 0.4412 | MVEAVTIEERPKHRDIRRYFCQYCGICRSKKTLIASHINSQHKEEDEKARKETDPETESSKSNTCEECGVTFKKHAYLLQHMQSHSFEHWIPDNELQNARGNEFRLDGSVSGRETSCEAPSRMPQSRSLNLRLARPFVCTVDDCHASYRRKDHLTRHLLLHEGKTFKCPFVNCNIEFSLQGNMKRHVEEIHDGSSTAAADKSHKQHVCPEIGCGKVFEFPSKLKKHEDSHVKLDSIEVVCLEPGCMKHFANVQGLRAHVNSCHQYMTCDICGSKQLKKNIKRHLRSHEPDSSSSETFPCEFKGCSCTFSKKSNLDKHKKAVHLKVKPFRCGYPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADAEFRSRPRGGRKRECPTIEMLIRKRVTPPSKLEDWLFMQDRE | 407 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu1g00417 | 407 | SUPERFAMILY | beta-beta-alpha zinc fingers | 164 | 192 | IPR036236 | - | |
| Vimu1g00417 | 407 | MobiDBLite | consensus disorder prediction | 38 | 62 | - | - | |
| Vimu1g00417 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 299 | 322 | IPR013087 | - | |
| Vimu1g00417 | 407 | PANTHER | ZINC FINGER PROTEIN | 11 | 394 | - | - | |
| Vimu1g00417 | 407 | MobiDBLite | consensus disorder prediction | 38 | 61 | - | - | |
| Vimu1g00417 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 208 | 230 | IPR013087 | - | |
| Vimu1g00417 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 266 | 287 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 297 | 322 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 166 | 191 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 19 | 42 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 328 | 354 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 137 | 161 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 238 | 263 | IPR013087 | - | |
| Vimu1g00417 | 407 | SMART | c2h2final6 | 206 | 230 | IPR013087 | - | |
| Vimu1g00417 | 407 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 90 | IPR013087 | - | |
| Vimu1g00417 | 407 | Gene3D | Classic Zinc Finger | 132 | 163 | - | - | |
| Vimu1g00417 | 407 | Pfam | Zinc finger, C2H2 type | 206 | 230 | IPR013087 | - | |
| Vimu1g00417 | 407 | Pfam | Zinc finger, C2H2 type | 64 | 85 | IPR013087 | - | |
| Vimu1g00417 | 407 | Pfam | Zinc finger, C2H2 type | 137 | 161 | IPR013087 | - | |
| Vimu1g00417 | 407 | SUPERFAMILY | beta-beta-alpha zinc fingers | 135 | 163 | IPR036236 | - | |
| Vimu1g00417 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 240 | 263 | IPR013087 | - | |
| Vimu1g00417 | 407 | Gene3D | Classic Zinc Finger | 3 | 91 | - | - | |
| Vimu1g00417 | 407 | Gene3D | Classic Zinc Finger | 292 | 364 | - | - | |
| Vimu1g00417 | 407 | SUPERFAMILY | beta-beta-alpha zinc fingers | 279 | 331 | IPR036236 | - | |
| Vimu1g00417 | 407 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 196 | IPR013087 | - | |
| Vimu1g00417 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 330 | 354 | IPR013087 | - | |
| Vimu1g00417 | 407 | Gene3D | Classic Zinc Finger | 193 | 266 | - | - | |
| Vimu1g00417 | 407 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 137 | 166 | IPR013087 | - | |
| Vimu1g00417 | 407 | Gene3D | Classic Zinc Finger | 164 | 192 | - | - | |
| Vimu1g00417 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
| Vimu1g00417 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 139 | 161 | IPR013087 | - | |
| Vimu1g00417 | 407 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 297 | 327 | IPR013087 | - | |
| Vimu1g00417 | 407 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 206 | 235 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu1g00417 | Vimu-Chr1 | 2516213 | 2518233 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu1g00417 | 133 | 357 | C2H2 Transcription Factor Family | AT1G72050 | 51.264 | 8.20e-91 | 275 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Vimu1g00417 | zf-C2H2 | 0.0015 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu1g00417 | K09191 | - | gmx:100801812 | 621.313 |