Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00416 ATGGATGCCCTCGATTTCTTCCCTCACAAAAGTAAAGAAACACAAGATGATGATGATGAAGATGATGATAATGATAACGACATTCATCATCATCAATCACTCGACTTTCATGTAGATACCAGTTTGGATCTCCTTACCAAGAACACAGGTGGCAACAGATCAGTTGAAGAAAATGATGCTTTGGAAACTATGGATGAAAAGAGGTTTGTAGCTTTGGTAACTGAATTGCATCAAGTGAATGCTGAAAATCAAAGATTAAGAGAGTTGATCGATCAGATGAACAATAACAGCAACGCCGTACGCATGCAACTTATCAAGATAACGCAGAAGCAGCATAACCTACGGAAGAATGGAGTGGATGGAGAGAAAGAAGAGATGGTTCCAAGGTCATTTTTAGAGATGGGTGTGACTGAAAAGGATGAGGCTTCGCAGCAACCCTCAGAGGAAAAACTGAGAGAAAGCAAAAGCGTGGTTGATTTGATGCATCGGTGTAAGGGTAATGAGAAAGATGTTGAAGATAAGTTGGATTGTGGAAGGGAAAGCTCAAAAGCTAGAATGGAAAGTGACCAAGAACTTTCTAACAAAGTTCCTAAATTGGATCAAAATTCAGAAACCTTGTCAATGATCAAGAAAGCCCGTGTGTCAGTTCGAGCAAGATCAGACTCCACTATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCAAGGGCCTATTATCGTTGCACAATGAGTACCGGTTGCCCAGTGCGTAAACAAGTACAAAGGTGTGCAGAAGATCGAAGTGTGTTGATCACTACATATGAAGGGCAGCATAATCATCCACTTCCTCCCACAGCTCAGGCTATGGCCTCAACCACATCTGCAGCTGCTTCAATGCTTCTTTCTGGATCAATGCCAAGCTCAGATGGCCTAATCAATCCATCCATCTTGGAAAATGCTTCACTTCCATGCTCTCAAAACATGGCAACTCTCTCTGCCTCAGCTCCATTTCCCACCATCACTCTCGATCTCACTCAAAATCCTACCAATTCCTCACACCACCAAAGGGATCCACACAACCAACTCAGCCTCCTCTCTCCCCTTTTGGCTCAGAAGTTCATGTCAGTTCCAAAATTATTCGGACACTCACTGTGCGATCAAACTAAGCTTGCTGGCTTACATGAATCTCAGGGAATGGACACGGCAGCTCCATCGTTTGCTAACTCACTGAATGCAGCAACTGCTGCTATCACTGCAGACCCCAATTTCACTGCTGCACTTGTGGCAGCCATAACATCTGTCATGGGAAGTTCACATTCAAACACCAGTGGCACCAGTAATACTACTGGGGATCACCACTGCAATAATAATGCATGA 1386 0.4387 MDALDFFPHKSKETQDDDDEDDDNDNDIHHHQSLDFHVDTSLDLLTKNTGGNRSVEENDALETMDEKRFVALVTELHQVNAENQRLRELIDQMNNNSNAVRMQLIKITQKQHNLRKNGVDGEKEEMVPRSFLEMGVTEKDEASQQPSEEKLRESKSVVDLMHRCKGNEKDVEDKLDCGRESSKARMESDQELSNKVPKLDQNSETLSMIKKARVSVRARSDSTMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPSILENASLPCSQNMATLSASAPFPTITLDLTQNPTNSSHHQRDPHNQLSLLSPLLAQKFMSVPKLFGHSLCDQTKLAGLHESQGMDTAAPSFANSLNAATAAITADPNFTAALVAAITSVMGSSHSNTSGTSNTTGDHHCNNNA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00416 461 MobiDBLite consensus disorder prediction 1 15 - -
Vimu1g00416 461 FunFam probable WRKY transcription factor 31 210 287 - -
Vimu1g00416 461 Coils Coil 76 103 - -
Vimu1g00416 461 SUPERFAMILY WRKY DNA-binding domain 218 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00416 461 MobiDBLite consensus disorder prediction 440 461 - -
Vimu1g00416 461 MobiDBLite consensus disorder prediction 1 34 - -
Vimu1g00416 461 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 54 448 IPR044810 GO:0003700
Vimu1g00416 461 Pfam WRKY DNA -binding domain 227 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00416 461 Gene3D WRKY domain 210 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00416 461 MobiDBLite consensus disorder prediction 179 194 - -
Vimu1g00416 461 MobiDBLite consensus disorder prediction 179 202 - -
Vimu1g00416 461 ProSiteProfiles WRKY domain profile. 220 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00416 461 SMART WRKY_cls 225 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00416 Vimu-Chr1 2511599 2513845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00416 4 447 WRKY Transcription Factor Family AT1G62300 43.943 2.03e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g00416 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00416 - - vum:124848283 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02998 2 29642271 29645713 Vimu1g00416 1 2511599 2513845 PCT
Vimu2g02493 2 20881888 20884515 Vimu1g00416 1 2511599 2513845 PCT