Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00408 ATGTCGGCGTCGGAGATTCTCCGGGAACTAGATTCACTGAAGGATGCAAAGGCAAAAATTGAGCATAAAATCTCTGCGCTAGAAGCTCAACTCAGAGAGATTAATCTCCGAAACGACGCCGCACTGTCCAATGGCTCTTCTTATCCTTCTTCGTACCCCACCAACGGTTTGACGCAGGACATGATCCACAGATACAGTCGTCATCTTATGCTTCCTTCCTTTGGTGTTGAAGGGCAGGCAAATCTGTTGAAGTCATCGATTTTGGTTGTGGGAGCTGGTGGATTGGGTGCGCCTGCATTGTTATACTTTGCAGCTGCTGGTGTTGGGCGCTTGGGTATTGTTGATCATGACGTGGTTGAGCTGAATAATATGCATAGGCAGGTTATCCACACAGAAGCATATGTTGGTAAGCCAAAAGTGAAGTCTGCCGCCGCTGCTTGTCTCTCGGTCAACTCCACTATTGAAGTTGTGGAACATGAAGAAGCTTTGCGGACTTCTAATGCTTTGGAAATTCTTAGCAAATATGATATAATTGTAGATGCAACAGATAATGCTCCTACCAGGTACCTGATCAGTGATTGCTGCGTGGTACTAGGAAAGCCTCTTGTCTCAGGTGCTGCGTTGGGAATGGAGGGGCAGCTTACTATCTACAATTACAAAGGTGGTCCGTGCTATAGATGCCTCTTTCCGTTGCCACCACCTAGAACGGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTTGGAGTAGTTCCTGGTATAATTGGCTGTCTCCAGGCTCTTGAGGCTATTAAGATTGCGGCTGCTGTTGGTGAACCACTCTCGGGAAGGATGCTTCTCTTGGATGCATTTTCTAAACCGTCTTGTAAATATGCTATCACAGTCAAAATTAGAGGAAGGTCTATGCATTGTGAAGCATGTGGAGAAAATGCAACATTTACACAGCAGAAATTCCAAGAATTTGATTACGAGAAGTTCACTGAGACTCCCTTGCGTGTGCCTCCTTTGAAGTTACATCTACTTCCGAGTGAATCTAGAATCAGCAGCAAGGAATACAGTGAAATAATTCTAAAGAAGGAACCACATGTGCTGGTTGATGTTAGACCAGCTCACCATTTCAAGATTGTATCTCTACCGAAGTCCCTGAACATTCCACTCTCAACGTTAGAGTCTCGGCTACCTGAAATATCATCAGCTTTGAAGAAAGAGGAGGACAGTGGTCTAGTTTCTGGATCAGGTGCACAATTGTATGTAGTGTGCAGAAGGGGAAATGATTCTCAAAGGGCTGTTCAGTGTCTTCACAAAATGGGTTTCACATCTGCCAAGGACATTGTTGGGGGCTTAGAGTCTTGGGCATACAACGTGGATCCCAAGTTCCCTACATATTAG 1386 0.4545 MSASEILRELDSLKDAKAKIEHKISALEAQLREINLRNDAALSNGSSYPSSYPTNGLTQDMIHRYSRHLMLPSFGVEGQANLLKSSILVVGAGGLGAPALLYFAAAGVGRLGIVDHDVVELNNMHRQVIHTEAYVGKPKVKSAAAACLSVNSTIEVVEHEEALRTSNALEILSKYDIIVDATDNAPTRYLISDCCVVLGKPLVSGAALGMEGQLTIYNYKGGPCYRCLFPLPPPRTACQSCAEGGVLGVVPGIIGCLQALEAIKIAAAVGEPLSGRMLLLDAFSKPSCKYAITVKIRGRSMHCEACGENATFTQQKFQEFDYEKFTETPLRVPPLKLHLLPSESRISSKEYSEIILKKEPHVLVDVRPAHHFKIVSLPKSLNIPLSTLESRLPEISSALKKEEDSGLVSGSGAQLYVVCRRGNDSQRAVQCLHKMGFTSAKDIVGGLESWAYNVDPKFPTY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00408 461 SMART rhod_4 347 456 IPR001763 -
Vimu1g00408 461 Coils Coil 3 44 - -
Vimu1g00408 461 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 27 461 IPR028885 GO:0002143|GO:0004792|GO:0005829
Vimu1g00408 461 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 60 316 IPR045886 -
Vimu1g00408 461 FunFam Adenylyltransferase and sulfurtransferase MOCS3 344 461 - -
Vimu1g00408 461 FunFam Adenylyltransferase and sulfurtransferase MOCS3 58 311 - -
Vimu1g00408 461 Gene3D - 344 461 IPR036873 -
Vimu1g00408 461 Gene3D - 58 313 - -
Vimu1g00408 461 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 52 428 IPR035985 GO:0008641
Vimu1g00408 461 ProSiteProfiles Rhodanese domain profile. 357 459 IPR001763 -
Vimu1g00408 461 Pfam Rhodanese-like domain 349 451 IPR001763 -
Vimu1g00408 461 Pfam ThiF family 65 283 IPR000594 -
Vimu1g00408 461 CDD ThiF_MoeB_HesA_family 64 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00408 Vimu-Chr1 2441531 2445484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00408 103 461 Sulfurtransferasese or Rhodanese AT5G55130 68.698 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00408 K11996 - gmx:100814736 779.245