Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00403 ATGCGGAAGGGAAGAGGAGGGGCGGCGTCGGTGGTCACGGCGGCGGCTGCGGCCGCCAACGGATCCCTTTTAAAAGAGCCTCGGTACCGGGGCGTGAGAAAGAGACCGTGGGGGAGGTATGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCTCGAGCCTACGACGCCGCCGCACGGACACTCCGGGGTCCCAAGGCCAAAACAAATTTCCCTCTTTCACACCCTTTCTGCTATCCGCACCCCACCACCAGTCCTCTCTTCTACGCGGGTTTCAACGACAACAACAACAACCACATCAGCAACCTTAACCACCCTCAGAGACCCGCTTCAAGTGGCATGAGTAGCACCGTCGAGTCTTTCAGCGGGCCACGCCCTACCACCGCCGGCGCTTCCACGACGCCGTTTTTGACCACCACGCGGAGATACCCGCGCACTCCCCCTCTCGTCCCCGAAGACTGCCACAGCGACTGCGACTCTTCCTCCTCCGTCGTCGACGACGGTGACAACATCGTCTCGTCGTCGTTCCGCCCTCCCCTGCCTTTTGATCTCAACGCGCCGCCGTTCGACGATGCCGCTGCCGATGACGATCTCCGCTGCACCGCGCTCTGCCTCTGA 657 0.6195 MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRYAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSHPFCYPHPTTSPLFYAGFNDNNNNHISNLNHPQRPASSGMSSTVESFSGPRPTTAGASTTPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNAPPFDDAAADDDLRCTALCL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00403 218 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Vimu1g00403 218 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Vimu1g00403 218 MobiDBLite consensus disorder prediction 120 156 - -
Vimu1g00403 218 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Vimu1g00403 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 183 - -
Vimu1g00403 218 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Vimu1g00403 218 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Vimu1g00403 218 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Vimu1g00403 218 MobiDBLite consensus disorder prediction 120 154 - -
Vimu1g00403 218 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Vimu1g00403 218 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Vimu1g00403 218 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00403 Vimu-Chr1 2407971 2408627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00403 1 218 AP2-EREBP Transcription Factor Family AT1G50640 58.621 1.22e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g00403 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00403 K09286 - gmx:100803943 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00403 1 2407971 2408627 Vimu1g00403 1 2407971 2408627 ECH
Vimu2g02487 2 20745727 20748776 Vimu1g00403 1 2407971 2408627 PCT