Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00397 ATGTATCTGCAGAACTCATATAATGTGGTGACTAAAAGATATAAATCTTACAATATGGGAAGCCAAATCGAACCAGCAAATGCAGCAAGACTGCATGGAGATAAATATTTCTTCTATAATTGTAGTTTTTTGGGTTATCAAGATACTTTATATGATCAATATGGACGTCATTACTTCAAAGATTGTTATATTGAAGGTGAAGTGGACTTTATATATGGCAGTGGACAATCTTACTATGAGAACTGTAAGATAAATGTATTGGGAAGATTTCCAGATTCTGCAGGGTTTGTGACAGCTCAGGGACGAAGTTCATCAGATGATCCAGATGGTTTTGTATTTGAAGGAGGGTTCCTTGGTGGGAATGGTAAAGTGAATTTAGGAAGAGCATGGCAACCCTATTCAAGAGTCATATTTCATAATACATATTTTTCTGACATTGTAACTCCTCAAGGATGGAGTGCTTGGCATTATGCAGGAAATGAGAGTGGAATCACTTATGTTGAAGTTGATTGTGGAGGACCAGGAGCTGATACCTCAAATCGTGTTTCATGGATGAAAAACCTAAATACTTCAGAAATAGAACAATTTTCTTTATCATCTTTTATTAATAAGGATGGATGGGTTGATAATTTACCAATAGAATCCTCCTAA 651 0.3548 MYLQNSYNVVTKRYKSYNMGSQIEPANAARLHGDKYFFYNCSFLGYQDTLYDQYGRHYFKDCYIEGEVDFIYGSGQSYYENCKINVLGRFPDSAGFVTAQGRSSSDDPDGFVFEGGFLGGNGKVNLGRAWQPYSRVIFHNTYFSDIVTPQGWSAWHYAGNESGITYVEVDCGGPGADTSNRVSWMKNLNTSEIEQFSLSSFINKDGWVDNLPIESS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00397 216 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 209 - -
Vimu1g00397 216 Gene3D - 1 216 IPR012334 -
Vimu1g00397 216 Pfam Pectinesterase 19 204 IPR000070 GO:0030599|GO:0042545
Vimu1g00397 216 SUPERFAMILY Pectin lyase-like 20 212 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00397 Vimu-Chr1 2374773 2375695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00397 6 208 Carbohydrate Esterase AT1G05310 43.269 9.58e-54 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00397 - - var:108336510 432.565