Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00396 ATGCTCGCCGTTATGTCTACCATCAAGCTCGTCGTCATGTCTACTGTCACGCTCGACATCATGTCTTCTGCCAAAGACTGTGGTGGAAATAATGTTGCACAGACCATCATTGTTGGTAAAGATAGGCACTCAGCATTCAGTACAATTCAAGCTGCCATTGATTCTGTAAGAAGTAACAATGATCAATGGGTAAAGATTCACATAAAAGCAGGCTTCTACATAGAAAGTGTTGTTATACCTATAAACAAGCCATGCATTATTTTAGAAGGAGAGGGTACCCCAAAAACAATCATTAGTCACTCCGATCACCAGTCCATAAACAATCATGCAACATTACTTTCTTTCCCAGACAATGTGCTTGCAAGTGGCATTACTTTCAAGAACTCATATAATGTGGCCACAACAAAATATAAATCTTACGATGAGGGAAGCAAAATCGAACCAGCAAACGCAGCAAGACTATTTGGAGATAAATATTTCTTCCATAACTGTAGTTTTGTGGGTTATCAAGACACTCTATATGATCACTCGGGACGTCATGTCTTTAAAGATTGTTACATTCAGGGTTATTCAGATTTTATATATGGTAACGGACGATCTTATTATACGGTAAATTTACCAGGATTTGTGACCGCTAATGGAAGAGAGTCTGCAGATGATCCTAGTGGTTTTGTATTTGAAGGAGGTTCCATTGTTGGGAATTGTAAAGTGAATTTAGGAAGAGCATGGAAACCCTATGCAAGAGTCGTATTTAAAAATACATATTTTTCTGACATTGTAACTCCTCAAGGATGGGTTGCTTGGTCAGCCTCTGGAAATGAGAGCAGGACCACTTATGCTGAAATTGATTGTAAGGGACCAGGAGCTAACACTGCGAAGCGTGTTCCATGGATGAAGAAACTAAGTTCTTCAGACTTGAATAATTTTTCTTTTGCATCTTTTATCAATAGTGATGGATGGGTTGACAACTTACATACATTATCTTAA 987 0.384 MLAVMSTIKLVVMSTVTLDIMSSAKDCGGNNVAQTIIVGKDRHSAFSTIQAAIDSVRSNNDQWVKIHIKAGFYIESVVIPINKPCIILEGEGTPKTIISHSDHQSINNHATLLSFPDNVLASGITFKNSYNVATTKYKSYDEGSKIEPANAARLFGDKYFFHNCSFVGYQDTLYDHSGRHVFKDCYIQGYSDFIYGNGRSYYTVNLPGFVTANGRESADDPSGFVFEGGSIVGNCKVNLGRAWKPYARVVFKNTYFSDIVTPQGWVAWSASGNESRTTYAEIDCKGPGANTAKRVPWMKKLSSSDLNNFSFASFINSDGWVDNLHTLS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00396 328 Pfam Pectinesterase 36 317 IPR000070 GO:0030599|GO:0042545
Vimu1g00396 328 Gene3D - 29 327 IPR012334 -
Vimu1g00396 328 SUPERFAMILY Pectin lyase-like 32 324 IPR011050 -
Vimu1g00396 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 322 - -
Vimu1g00396 328 FunFam Pectinesterase 30 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00396 Vimu-Chr1 2362412 2365444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00396 11 274 Carbohydrate Esterase AT2G19150 42.599 8.01e-70 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00396 - - var:108336510 441.425