Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00395 ATGAGTCTTCTTCCCATCTTTTTCATTAGTTGTTTCTTTAGTCTTAGTAGAGCCACAGACTGTGGTGGAAATAAGGTTACACAAACCCTAATTGTTGGTAAGTATGGGCACAACGCATTCAGGACAATTCAAGCTGCCATTGATTCTGTAAGAAGTAACAATGATCAATGGGTAAAGATTCACATAAAAGCAGGCTTGTACGAAGAAAGTGTTATTATTCCTGTTGACAAGCCATGCATCATTTTAGAAGGAGAAGGTAGCGGAACAATCATCAGGCACTCCGACCACCAGTCAGGTGATACGGATTTTATATATGGTTACGGACGATCTTATTATATGAACTGTTTCATCAATGTTGTTGGGAGATTTCCAAATTTACCAGGTTTTGTGACAGCTCAGGGAAGAAATTCAGCAGATGATCCTAGTGGTTTTGTATTTGAAGGAGGTTCCATTGTTGGTAATGTTAAAGTGAATTTAGGAAGAGCATGGCGACCATATTCAAGAGTCATATTTAAAAATACATATTTTTCTGACATTGTAACTCCTCATGGATGGGTTGCTTGGTCAGCATCTGGAAATGAGAGGACGACCACTTATGCTGAAATTGATTGTAAGGGACCAGGAGCTGCTGACACTTCGAAGCGTGTTCCATGGATGAAGAAACTAAGTTCTTCGGACTTGAATGAGTTTTCTTTTGCATCTTTTATCAATAGTGATGGATGGTCGATGAATCTCGACGACGACATTGAGTGTCGAATCTCCATTGCTTGA 771 0.3956 MSLLPIFFISCFFSLSRATDCGGNKVTQTLIVGKYGHNAFRTIQAAIDSVRSNNDQWVKIHIKAGLYEESVIIPVDKPCIILEGEGSGTIIRHSDHQSGDTDFIYGYGRSYYMNCFINVVGRFPNLPGFVTAQGRNSADDPSGFVFEGGSIVGNVKVNLGRAWRPYSRVIFKNTYFSDIVTPHGWVAWSASGNERTTTYAEIDCKGPGAADTSKRVPWMKKLSSSDLNEFSFASFINSDGWSMNLDDDIECRISIA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00395 256 Gene3D - 15 96 IPR012334 -
Vimu1g00395 256 Gene3D - 97 250 IPR012334 -
Vimu1g00395 256 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 24 97 - -
Vimu1g00395 256 SUPERFAMILY Pectin lyase-like 28 242 IPR011050 -
Vimu1g00395 256 Pfam Pectinesterase 98 238 IPR000070 GO:0030599|GO:0042545
Vimu1g00395 256 Pfam Pectinesterase 30 91 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00395 Vimu-Chr1 2355179 2357396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00395 26 86 Carbohydrate Esterase AT1G05310 40.984 1.10e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00395 - - var:108336510 218.009