Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00394 ATGGAGTTGTTTTCTAGATGGATGAGTCTTCTTCCCATATTTTTCATTAGTTGTTTCTTTGGTCTTGGTAGAGCCACAGACTGTGGTGGAAATAATGTTACACAAACCCTAATTGTTGGTAAATATGGGCAAGCAGCATTCAGAACAATTCAAGCTGCCATTGATTCTGTCAAAAGTAACAATGATCAATGGGTAAAGATTCACATAAAAGCAGGCTTCTACATGGAAAGTGTTGTTATTCCCGTTGACAAGCCATGCATTATTTTAGAAGGAGAAGGTATACGAACAATCGTTAGTCACTGGGACCATCAGTCCATAAACAATAATGCTACATTCACTTCTTTCTCATCAAATTTGATGGCAAGTGACATTACTTTCAAGAACTCATATAATGTGGCCACTGATAAATATTTGGAAAATAAAATCGAACCAGCAAATGCAGCAAGACTGTCTGGGGATAAATATTTGTTCAGTAGGTGTAGGTTTATTGGTTATCAAGACACTTTATACGATCTTATGGGACGTCATGTCTTTAAAGATTGTTACATTCAGGGTGAAGTGGACTTTATATATGGTAACGGACAATCTTATTATCAGAACTGCTCCATCAATGCTATGGGGAGATTTCCAAATTTACCAGGTTTTGTGACAGCTCAGGGAAGAAAGTCAGCAGATGATCCTAGTGGTTTTGTATTTGAAGGAGGTTCCATTGTTGGTAATGTTAAAGTGAATTTAGGAAGAGCATGGCGACCATATTCAAGAGTCATATTTAAAAATACATATTTTTCTGACATTGTAACTCCTCATGGATGGGTTGCTTGGAGAGCAGCCAGCAATGAGAACGCAACTACTTATGCTGAAGTTGATTGTAAGGGACCAGGAGCTGACACTTCGAAACGTGTTGCATGGATGAAGAAACTAAGTTCTTCGGACTTGAATGAGTTTTCTTTTGCATCTTTTATCAATAGTGATGGATGGGTTCACAACTTACCAACAATATCTTAA 1005 0.3751 MELFSRWMSLLPIFFISCFFGLGRATDCGGNNVTQTLIVGKYGQAAFRTIQAAIDSVKSNNDQWVKIHIKAGFYMESVVIPVDKPCIILEGEGIRTIVSHWDHQSINNNATFTSFSSNLMASDITFKNSYNVATDKYLENKIEPANAARLSGDKYLFSRCRFIGYQDTLYDLMGRHVFKDCYIQGEVDFIYGNGQSYYQNCSINAMGRFPNLPGFVTAQGRKSADDPSGFVFEGGSIVGNVKVNLGRAWRPYSRVIFKNTYFSDIVTPHGWVAWRAASNENATTYAEVDCKGPGADTSKRVAWMKKLSSSDLNEFSFASFINSDGWVHNLPTIS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00394 334 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 31 327 - -
Vimu1g00394 334 Pfam Pectinesterase 37 323 IPR000070 GO:0030599|GO:0042545
Vimu1g00394 334 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vimu1g00394 334 FunFam Pectinesterase 31 331 - -
Vimu1g00394 334 Gene3D - 30 332 IPR012334 -
Vimu1g00394 334 SUPERFAMILY Pectin lyase-like 35 329 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00394 Vimu-Chr1 2348152 2350026 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00394 27 280 Carbohydrate Esterase AT2G19150 44.186 5.41e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00394 - - var:108336510 465.307