Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00385 ATGGAGATGCTTCATGGATCTCTCTTTTTTCCTCTCCTATTGTTTCTTTGCTGTTCATGTGGCGGTGCAGCCATGGATTGTTTGGGGAACAAAATCGTTCACACCATTGTAGTTGATCAGCAAGGCAAAGGAGATTTCACAACAGTTCAAGCTGCTATTGATTCCATAAAGGAAAACAACTATCAATGGGTCAAAATTCACGTAAATCCTGGCAAATACATAGAGAAGGTTATAATATGGGAGGATAAAGCATGCATCTTTTTAGAAGGGCAGGGAAAAGAGGTAACCACCGTAACATCAAGTGGGTACCACCGCGCTACTGCGACCGTTGCATCAAGTAAATACAAAATAAAGGACCATTTGGGTGCTACATTTGTATGTTTTCCCTCCAATGTAATTGTTATCGGCATTACCTTCCAGAATTCGTATAATCTTGTAGGGTCAGAAGCCATTGAACCTGCACCAGCAGCGGCCATATACGGTGACAAATCTGTGTTCATTAAGTGTGGTTTCGAAAGTTATCAAGATACTCTCTTTGATGCACAGGGTCGCCATTATTTCAAAGATTGTTACGTTGAAGGTGAAGTTGACTTCATTTATGGCAACGGTCAATCTTACTATGAGAATTGTATCATAAATGCGACGCTTGGAAGATCTCCTCCAGGTTTTGTAACAGCACAATCTCGAGAATCAGAAAATGAAGAAAGTGGTTTTGTTTTCAGAGGAGGTTGTGTGATTGGAAATGGTGAAGTGAAGCTTGGAAGAGCTTATGGAGCTTATTCAAGAGTTATATTTTATGGAACATATTTATCTTCAGTTGTCTCCCCTCAAGGCTGGGATGCTTGGGGCTACACTGGCCAAGAGTCCAGGTTTACTTATGGTGAGGTAGAGTGTAGTGGAGAAGGAGCAAACGCTAGCGGGCGCGTAAAGTGGGAGAAGAAGCTTACGAATTCGCAGTTGGAAGAGTTTTCTTTGTCATCGTTTATCAACCAAGAGGGATGGCTTTCTTACTTACCAGTCAAATTTTAA 1029 0.415 MEMLHGSLFFPLLLFLCCSCGGAAMDCLGNKIVHTIVVDQQGKGDFTTVQAAIDSIKENNYQWVKIHVNPGKYIEKVIIWEDKACIFLEGQGKEVTTVTSSGYHRATATVASSKYKIKDHLGATFVCFPSNVIVIGITFQNSYNLVGSEAIEPAPAAAIYGDKSVFIKCGFESYQDTLFDAQGRHYFKDCYVEGEVDFIYGNGQSYYENCIINATLGRSPPGFVTAQSRESENEESGFVFRGGCVIGNGEVKLGRAYGAYSRVIFYGTYLSSVVSPQGWDAWGYTGQESRFTYGEVECSGEGANASGRVKWEKKLTNSQLEEFSLSSFINQEGWLSYLPVKF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00385 342 FunFam Pectinesterase 30 339 - -
Vimu1g00385 342 SUPERFAMILY Pectin lyase-like 35 341 IPR011050 -
Vimu1g00385 342 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 336 - -
Vimu1g00385 342 Gene3D - 29 342 IPR012334 -
Vimu1g00385 342 Pfam Pectinesterase 36 331 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00385 Vimu-Chr1 2299863 2301283 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00385 7 288 Carbohydrate Esterase AT2G19150 41.812 2.24e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00385 - - gmx:100803932 476.092