Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00377 ATGGAGACGGAGGAGGAGCTCGTTCCCGATCCCAAACCGGAGGAACAGACGTTGCCGCTTCAGAACGGGGACTCTGACCAGCGCTGCGCCAAGAAGCCCAAGGTTGACGAGGACGCCGAATTGAAGAGAGTGGCCGAGATTGTTCTCGTTCTCTCCACCATGGCCTCCGTGCGTGCGGGGAGGAAGCCCTCCGACGCTGAGGTCGAGCTCATGAGAGAGGCGCGCGCTAAGCTCGCCGGCCTCTGCCAGGGTTTGGCTCCCAAGGATATTGTAGCCAGGGAAGCAATTGGAACCGTTATTGAGGATCTCGGATTGCACTCCAAGCTTAAGGACCAGAGGCTAGGGTTTCGAACTCCCAAGATGTCTATTGCCGAGAGGTATTCACATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCTTCTACAACACATACATCTCAACCCTTACAATCAAACATTGGTGGACCTGTTGACAATCGTGTGCCATCACATGTTCGAATGTTCGCTTCTGATAAACCAAGCCAGCCAGCAATTCCTTCTATGGGTACCGTAGTGTCTATTCCTCCCCATGTTTCTGCAGGATCTTCTGCAGTATTGCAGTACCAGTCAACTGGCAATGAAGTAAGACCACCTGTGGTTTCTGGTGTGATGCCTAGCGGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCTAAAGCTGAACATCCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTATATGCTACAAGTCCAAGCAAATTCATCAGCAAACCAACCTTTGGTGAATGCTCCAGCATGGTCTATACCGACTCAAGCTGCTTCAATAGCAAGAACTGCATCAGAAAACAAGGTGCCTGTTACTACCTCTGTGAAGGTTGAAGGAACATTCGACACAACCGTATCAAGGGCAGGGCCTCAAATAACAACAGACCCAAGCTTTAGACCGTTTATAACTCCAACAGCTTCTGTAAATTTGTCTACTGTGCACCAGCCTTTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCCAGTCACACTGATATTGCAAAGGTTGTCCAGAAAGTGTTACAACCAAAGCTTCCCAGTCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTCAGTGTTCAGGAGGTTGATACTGTGCTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTTTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTGGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCGCCAAAGTATGGTCGTGTCATGAGATCGTCAAGCACACCACCAAAATTGCCCTCTAATATTGGTGGTATTCAAGCTTGTTCTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCCTGCAGATGGTAACAAATGGGAGCACTGTTCCAACTGTTGCCAGTGGTAATCACAATGTTGAGGTGCCATGTTACTCAAAGTTCGCTGATACCAAAGGTATACAAGGGATTGGCATTTCATCCAGTATTGAAGCTATAGATAAGAAGCCGGATCCAAACAACTCTATGAAATCTCTTAATGCAGGCTCTAGTCCTTCTATTGGCATGCTAGGTGAGTGCTCTACCAAACAAATAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGATTGTGAGTCTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAGTATGCAGTCATCTCAAAATTTTCAAGTGGAACAGACAATGTCAAAAGACAATGCTGAAGTATCACCAGATAAACGCATTGATAGTAATATTATGAATAATAATCAAAAGGACTCTCTTGAAGGGGAAAGTTTAACTTATGATATCAAGCGTGATGACAAAGATGCTGCACTTGCAAACATTGTTGGAATTTCTGGAACTAATACTGAAGGTAGACAGAACTCAGCATTATCATCAGATGGTTCACATGCTATAGAATGGATCGGTGATGTAGTACAACTCGTAGATGAAAAGATTTTTTACCAATCTTGTTGTGTTGATGGAGTAACGTATAGGCTACAGGGTCATGCTCTTTTTCCTTCCAGCAATGGAAAACTAGCTCCTTCTAAACTCCAGGCAAGCAAATTATCAATATTTCCTTCCATTGTATGCCAGCCATTGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTAAAGGTAACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGACTAGCTCTATTCAAGGTCCATGTGAAGTACTCCCGTCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAGTTAGGAATTGAGGAAAGTACTAGAATACAGCCCATTTTCCTTTGCAGATGGATGGAAACAGAAGAAGCTTGCCGGAAAACAGTAACAGGAAGTCTAAGACTGACAAAATATTTGGAAGAGAGAATATGTAATTCTGTCGCTAGACATCTCTGGTGGGATGGGCGGGCAAAAGATGGGATGCCTTTAGAAATTCCCGCTGAAGAGCTGGCAATTCGGCTGTCAGCTCTGACACCCCAAAATGCACTCTATGATGTGGCTGCAGCGCCCAGCGACCTCTCTGTGGTTCTGTTGCACTCTATTAATTACTTTGGTAACAGGTGGAGTGTGGACAAGACAGAAGAGCAGCCTGCTCTGTACTTAAATTCGCTGGAGAAGTGGTCGTCTCTTCTCTGGTGGTTTTATGATGCATTCAAAAAGTTATTTCAACCTGCAGGTGTTTTGGGGGTTTTGGAACGGGGTTTTTCTTGTATTGGTGGGTAA 2904 0.4442 METEEELVPDPKPEEQTLPLQNGDSDQRCAKKPKVDEDAELKRVAEIVLVLSTMASVRAGRKPSDAEVELMREARAKLAGLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQSNIGGPVDNRVPSHVRMFASDKPSQPAIPSMGTVVSIPPHVSAGSSAVLQYQSTGNEVRPPVVSGVMPSGHLGRNSSSLVLPKAEHPQFKVDGGSNGSSYMLQVQANSSANQPLVNAPAWSIPTQAASIARTASENKVPVTTSVKVEGTFDTTVSRAGPQITTDPSFRPFITPTASVNLSTVHQPLQATNIVQPPLIPSHTDIAKVVQKVLQPKLPSHPTWIPPSRDYMNKALTCQMCELSVQEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSSTPPKLPSNIGGIQACSENKAENIEPKVLQMVTNGSTVPTVASGNHNVEVPCYSKFADTKGIQGIGISSSIEAIDKKPDPNNSMKSLNAGSSPSIGMLGECSTKQINSKVLTSKETSDCESLPKLSEPAKCESMQSSQNFQVEQTMSKDNAEVSPDKRIDSNIMNNNQKDSLEGESLTYDIKRDDKDAALANIVGISGTNTEGRQNSALSSDGSHAIEWIGDVVQLVDEKIFYQSCCVDGVTYRLQGHALFPSSNGKLAPSKLQASKLSIFPSIVCQPLSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMTSSIQGPCEVLPSDKFKQENDRRCQLGIEESTRIQPIFLCRWMETEEACRKTVTGSLRLTKYLEERICNSVARHLWWDGRAKDGMPLEIPAEELAIRLSALTPQNALYDVAAAPSDLSVVLLHSINYFGNRWSVDKTEEQPALYLNSLEKWSSLLWWFYDAFKKLFQPAGVLGVLERGFSCIGG 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00377 967 CDD PHD_SF 387 435 - -
Vimu1g00377 967 ProSiteProfiles Zinc finger PHD-type profile. 385 438 IPR019787 -
Vimu1g00377 967 Gene3D - 666 852 IPR043151 -
Vimu1g00377 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 449 IPR013083 -
Vimu1g00377 967 MobiDBLite consensus disorder prediction 141 160 - -
Vimu1g00377 967 SMART PHD_3 387 436 IPR001965 -
Vimu1g00377 967 Pfam PHD-finger 388 436 IPR019787 -
Vimu1g00377 967 MobiDBLite consensus disorder prediction 595 624 - -
Vimu1g00377 967 MobiDBLite consensus disorder prediction 1 36 - -
Vimu1g00377 967 CDD BAH 695 825 - -
Vimu1g00377 967 ProSitePatterns Zinc finger PHD-type signature. 388 435 IPR019786 -
Vimu1g00377 967 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 830 - -
Vimu1g00377 967 SUPERFAMILY FYVE/PHD zinc finger 378 443 IPR011011 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu1g00377 PHD 2.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00377 - - gmx:100807139 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00377 1 2228381 2237597 Vimu1g00377 1 2228381 2237597 ECH