Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00375 AAGTTTGAAGCACAAGAGCAGAGAGGGGAAGAAGCGGTTGCAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGATGTCAACAGACTTGGACAGGCAGATAGAGCAGTTGAAGAGATGTGAGCCTCTGAAGGAGTCTGAAGTGAAGGCTCTCTGCCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGCAACGTTCAAAGGGTCGATGCTCCTGTCACCATATGTGGTGATATTCACGGTCAGTTTTATGACATGAAGGAGCTTTTCAAAGTGGGAGGGGATTGCCCCAAGACTAACTATTTGTTCCTTGGGGATTTTGTTGATAGAGGATTTTACTCAGTTGAAACATTTCTGCTTCTTCTCGCTCTTAAGGTGAGGTATCCAGATCGGATAACACTCATAAGGGGAAACCATGAAAGCCGTCAGATCACTCAGGTATATGGATTCTATGATGAGTGCCTTCGAAAGTATGGTTCAGTCAATGTATGGAGATATTGTACTGATATATTCGACTACTTAAGTTTGTCGGCCTTAATTGAAAACAAGATTTTCAGTGTTCATGGGGGTCTTTCTCCTGCAATTTCAACACTGGATCAGATACGGACTATTGATCGGAAGCAAGAGGTACCTCATGATGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAAGATATTGTGGATGGATGGGGTCTCAGTCCTCGTGGTGCTGGTTTCTTATTTGGTGGCAGTGTTGTCACTTCCTTTAACCACTCAAACAACATTGACTATATATGCCGTGCTCATCAGTTGGTGATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACCGTCTGGTCAGCTCCAAATTATTGCTACAGATGTGGTAATGTAGCTGCAATTCTTGAGTTGGATGGAAATCTGAATAAGCAGTTCCGGGTGTTTGAAGCTGCTCCACAGGTTTGTAGGCAAAAAAATTACCTGATATTTATCGTGATCGAGAGTTCCCTGTTTAAAGTGAGCTATTATACCGATTTTTCTCAAGTAGTAGCAATATCAGTCTCTCTATTGTCAAATTCATTTATGTGGAATCAAGAGGGACACCTGCAAAGAAACCAGCACCAGATTACTTCCTATGAAGGGTTATTTTTTTTTTCTTTCCATTATCGAAATGCTCATATTGGTGTTGGGAGACTTGAATCAAGGAGATCATTTCTGACTGGGGAGGAATCAACGAAGGGAAAAATCGGTTGTGCTGGCAGGAATTCTGCATCCCATTGGTCTGCTTCGCCCATCTTTAGTGTTATAGCAGTATTGTGA 1305 0.4261 KFEAQEQRGEEAVAERERERERGREMSTDLDRQIEQLKRCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDGNLNKQFRVFEAAPQVCRQKNYLIFIVIESSLFKVSYYTDFSQVVAISVSLLSNSFMWNQEGHLQRNQHQITSYEGLFFFSFHYRNAHIGVGRLESRRSFLTGEESTKGKIGCAGRNSASHWSASPIFSVIAVL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00375 434 Pfam Calcineurin-like phosphoesterase 71 263 IPR004843 GO:0016787
Vimu1g00375 434 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 26 317 IPR047129 GO:0004722
Vimu1g00375 434 FunFam Serine/threonine-protein phosphatase 25 322 - -
Vimu1g00375 434 ProSitePatterns Serine/threonine specific protein phosphatases signature. 134 139 IPR006186 GO:0016787
Vimu1g00375 434 PRINTS Serine/threonine phosphatase family signature 71 98 IPR006186 GO:0016787
Vimu1g00375 434 PRINTS Serine/threonine phosphatase family signature 168 194 IPR006186 GO:0016787
Vimu1g00375 434 PRINTS Serine/threonine phosphatase family signature 133 157 IPR006186 GO:0016787
Vimu1g00375 434 PRINTS Serine/threonine phosphatase family signature 100 127 IPR006186 GO:0016787
Vimu1g00375 434 PRINTS Serine/threonine phosphatase family signature 197 224 IPR006186 GO:0016787
Vimu1g00375 434 PRINTS Serine/threonine phosphatase family signature 254 274 IPR006186 GO:0016787
Vimu1g00375 434 PRINTS Serine/threonine phosphatase family signature 276 292 IPR006186 GO:0016787
Vimu1g00375 434 SUPERFAMILY Metallo-dependent phosphatases 28 321 IPR029052 -
Vimu1g00375 434 Gene3D - 3 399 IPR029052 -
Vimu1g00375 434 MobiDBLite consensus disorder prediction 1 28 - -
Vimu1g00375 434 Coils Coil 2 22 - -
Vimu1g00375 434 CDD MPP_PP2A_PP4_PP6 29 314 - -
Vimu1g00375 434 SMART pp2a_7 43 314 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00375 Vimu-Chr1 2218216 2222975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00375 50 249 Calmodulin-binding Proteins AT5G63870 37.190 1.04e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00375 K15423 - fve:101293669 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00375 1 2218216 2222975 Vimu1g00375 1 2218216 2222975 ECH