Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00374 ATGGCATCTTCTTCAAACTCATGGATGAAGGAATATAATGAAGCACTGAAACTTGCTGACGATATCAGTGGTATGATTTCTGAGCTGAGTTCATTTCCTGCATCTGGACCAGAAATCCAGCGTCATTCATCTGCTATAAGGAGGAAGATTACTATATTGGGTACCCGGCTTGATAGCTTGCAATCTCTATTGTCCAAGCTTCCTGGAAAGCAGCCGCCCATATCTGAGAAGGAGATGAATCGTCGGAAGGACACGCTCGCAAGTTTGAGATCAAAAGTTAATCAAATGGCTTCCACATTGAACATGTCAAACTTTTCAAATAGAGATAGTTTGCTTGGACCAGAAGGAAAACCAGATGCTATGGCCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGATTTCAACGGCAAATAATGAAAGCAGAACAAGATGAGGGCCTTGAGCAATTGGAAGTGACTATAGCAAGCACAAAACATATTGCTTTGGCAGTGAATGAAGAGCTGAGTCTACACACCAGACTCATTGATGACTTGGATCAGCATGTAGATGTCACAGATTCGAGGCTTAGGCGTGTGCAGAAGAACTTGGCAATTTTAAACAAGCGAACCAGGGGTGGTTGTTCCTGCCTGTGCATGCTTTTATCAGTTGTTGGTGAAGCTATGATCCTTATCTTTGCTCTTTTAGTCAAGCGATTGCCCGAGTAA 708 0.4322 MASSSNSWMKEYNEALKLADDISGMISELSSFPASGPEIQRHSSAIRRKITILGTRLDSLQSLLSKLPGKQPPISEKEMNRRKDTLASLRSKVNQMASTLNMSNFSNRDSLLGPEGKPDAMARTVGLDNNGLVGFQRQIMKAEQDEGLEQLEVTIASTKHIALAVNEELSLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTRGGCSCLCMLLSVVGEAMILIFALLVKRLPE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00374 235 CDD SNARE_Qc 141 198 - -
Vimu1g00374 235 Pfam SNARE domain 175 219 IPR000727 -
Vimu1g00374 235 Gene3D - 142 202 - -
Vimu1g00374 235 SMART tSNARE_6 133 200 IPR000727 -
Vimu1g00374 235 PANTHER SYNTAXIN 22 223 IPR045242 -
Vimu1g00374 235 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 138 200 IPR000727 -
Vimu1g00374 235 FunFam syntaxin-51 isoform X2 139 202 - -
Vimu1g00374 235 SUPERFAMILY SNARE fusion complex 136 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00374 Vimu-Chr1 2212700 2214325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00374 1 233 SNARE and Associated Proteins AT1G16240 68.085 6.16e-113 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00374 K08503 - gmx:100782666 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00374 1 2212700 2214325 Vimu1g00374 1 2212700 2214325 ECH